Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 63962 | 0.74 | 0.319959 |
Target: 5'- cGUGUACACGUGCCUgCUG-CGC-CUCg -3' miRNA: 3'- -CGCAUGUGCGCGGGgGGCaGCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 114869 | 0.74 | 0.327036 |
Target: 5'- gGCGcGCACGCGCaCCCCCGUCa----- -3' miRNA: 3'- -CGCaUGUGCGCG-GGGGGCAGcgagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 121981 | 0.73 | 0.334227 |
Target: 5'- gGUGUGCACGUucgacgGCCCCgCCGUCGUgcgaUCg -3' miRNA: 3'- -CGCAUGUGCG------CGGGG-GGCAGCGag--AG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 125284 | 0.73 | 0.371902 |
Target: 5'- gGCGUACGCgGCgGCCgUCCUGUCGUUcCUCg -3' miRNA: 3'- -CGCAUGUG-CG-CGG-GGGGCAGCGA-GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 73767 | 0.73 | 0.36414 |
Target: 5'- cGCGcucgGCGCGCGCaCCCCCGgguaCGCUg-- -3' miRNA: 3'- -CGCa---UGUGCGCG-GGGGGCa---GCGAgag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 132556 | 0.73 | 0.348955 |
Target: 5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3' miRNA: 3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 39592 | 0.73 | 0.36337 |
Target: 5'- --cUGCACGCGCCCCUCGUucauguaCGCcagCUCg -3' miRNA: 3'- cgcAUGUGCGCGGGGGGCA-------GCGa--GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 53786 | 0.73 | 0.36414 |
Target: 5'- gGCGUggAgGCGCGCCgCCCCGUggagaggucgCGCUCg- -3' miRNA: 3'- -CGCA--UgUGCGCGG-GGGGCA----------GCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 71299 | 0.73 | 0.36414 |
Target: 5'- gGCGccAC-CGaGCCCCCCGUCGCgagaCUCg -3' miRNA: 3'- -CGCa-UGuGCgCGGGGGGCAGCGa---GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 144102 | 0.73 | 0.371902 |
Target: 5'- gGCGaACAUGCGCCCCCCaGUacggGC-CUCc -3' miRNA: 3'- -CGCaUGUGCGCGGGGGG-CAg---CGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 67487 | 0.73 | 0.371902 |
Target: 5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3' miRNA: 3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 62911 | 0.73 | 0.334227 |
Target: 5'- cGCGUGCACGCGCggaacgggcgCgCCCUGUCGCa--- -3' miRNA: 3'- -CGCAUGUGCGCG----------G-GGGGCAGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 7047 | 0.73 | 0.348955 |
Target: 5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3' miRNA: 3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 111641 | 0.73 | 0.348955 |
Target: 5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3' miRNA: 3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 106234 | 0.73 | 0.341534 |
Target: 5'- -gGUGCACGCGCCCCCggCGUCGg---- -3' miRNA: 3'- cgCAUGUGCGCGGGGG--GCAGCgagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 59287 | 0.72 | 0.404059 |
Target: 5'- cGCGgGCGCGCGgcaCCCgCCCGcCGCgagCUCg -3' miRNA: 3'- -CGCaUGUGCGC---GGG-GGGCaGCGa--GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 89956 | 0.72 | 0.404059 |
Target: 5'- aGCGgcgGCGCGCCUCCCGacgCGC-CUCc -3' miRNA: 3'- -CGCaugUGCGCGGGGGGCa--GCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 46864 | 0.72 | 0.395856 |
Target: 5'- cGCGUGCACGCGCCaCgUCaGUCGCa--- -3' miRNA: 3'- -CGCAUGUGCGCGG-GgGG-CAGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 113035 | 0.72 | 0.395856 |
Target: 5'- gGCGUugACgucagGCGCCCCCUGUU--UCUCa -3' miRNA: 3'- -CGCAugUG-----CGCGGGGGGCAGcgAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 126655 | 0.72 | 0.378984 |
Target: 5'- uGCuGUuCGCGCGCCCCgucgacgCCGUCGUgcugCUCg -3' miRNA: 3'- -CG-CAuGUGCGCGGGG-------GGCAGCGa---GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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