miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 4903 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 117686 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 2060 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 65523 0.7 0.500835
Target:  5'- cGCGcccCugGCGCCCCCCcUCGCccccggUCUUc -3'
miRNA:   3'- -CGCau-GugCGCGGGGGGcAGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 86863 0.7 0.49159
Target:  5'- aGCGcACugGUGCCCCCCGgUGC-Cg- -3'
miRNA:   3'- -CGCaUGugCGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 125618 0.69 0.567422
Target:  5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3'
miRNA:   3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 120725 0.69 0.567422
Target:  5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3'
miRNA:   3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 85622 0.69 0.567422
Target:  5'- gGCGgccgaccCGCGgGCCCCgCGgUGCUCUCc -3'
miRNA:   3'- -CGCau-----GUGCgCGGGGgGCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 34783 0.69 0.577144
Target:  5'- aGC-UGCGC-CGCCUCCCGcgucgCGCUCUg -3'
miRNA:   3'- -CGcAUGUGcGCGGGGGGCa----GCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 119027 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 3434 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 68887 0.69 0.577144
Target:  5'- gGCGccCGCGcCGCCUCCCGcUCGCggUCg -3'
miRNA:   3'- -CGCauGUGC-GCGGGGGGC-AGCGagAG- -5'
21658 3' -60.5 NC_004812.1 + 117563 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 32360 0.69 0.577144
Target:  5'- gGCGccgccGCGCGCGCCCCCCGccaggccCGC-Cg- -3'
miRNA:   3'- -CGCa----UGUGCGCGGGGGGCa------GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 15072 0.69 0.586903
Target:  5'- gGCGgcgACACGuCGCCgCCCGcCgGCUCg- -3'
miRNA:   3'- -CGCa--UGUGC-GCGGgGGGCaG-CGAGag -5'
21658 3' -60.5 NC_004812.1 + 154548 0.69 0.577144
Target:  5'- cGCGggggGCGCgcccccucccccGCGCCCCCCGcCGC-Cg- -3'
miRNA:   3'- -CGCa---UGUG------------CGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 73796 0.69 0.557741
Target:  5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3'
miRNA:   3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 36235 0.69 0.538528
Target:  5'- cGCGU--ACGCGCCCCCgGcCGCg--- -3'
miRNA:   3'- -CGCAugUGCGCGGGGGgCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 148464 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 76442 0.69 0.548108
Target:  5'- uCGUGCAUGCGa---UCGUCGCUCUCc -3'
miRNA:   3'- cGCAUGUGCGCggggGGCAGCGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.