miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 126862 0.71 0.473344
Target:  5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3'
miRNA:   3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 117252 0.71 0.473344
Target:  5'- gGCGUACcCGgGCCCgCCGagCGCUC-Cg -3'
miRNA:   3'- -CGCAUGuGCgCGGGgGGCa-GCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 1354 0.71 0.473344
Target:  5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3'
miRNA:   3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 41172 0.71 0.473344
Target:  5'- aGCcccgGCGCGcCGCCCCaaCGUCGCUCg- -3'
miRNA:   3'- -CGca--UGUGC-GCGGGGg-GCAGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 18237 0.71 0.473344
Target:  5'- gGCGUACGCGCcCCCgCCCGUCccGCg--- -3'
miRNA:   3'- -CGCAUGUGCGcGGG-GGGCAG--CGagag -5'
21658 3' -60.5 NC_004812.1 + 103594 0.71 0.473344
Target:  5'- cGCGUGCcCGCGCgCCCCGggacgUGCUa-- -3'
miRNA:   3'- -CGCAUGuGCGCGgGGGGCa----GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 127569 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 2060 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 10431 0.7 0.49067
Target:  5'- cGCGUcCAcCGCGUCCucaccuacucgcaCCCGUCGCcgcUCUCg -3'
miRNA:   3'- -CGCAuGU-GCGCGGG-------------GGGCAGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 86863 0.7 0.49159
Target:  5'- aGCGcACugGUGCCCCCCGgUGC-Cg- -3'
miRNA:   3'- -CGCaUGugCGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 65523 0.7 0.500835
Target:  5'- cGCGcccCugGCGCCCCCCcUCGCccccggUCUUc -3'
miRNA:   3'- -CGCau-GugCGCGGGGGGcAGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 47150 0.7 0.500835
Target:  5'- aGCccGCGgGCGCCCCCgCGcCGCcCUCu -3'
miRNA:   3'- -CGcaUGUgCGCGGGGG-GCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 55659 0.7 0.500835
Target:  5'- cGCGgcgGCGCGCCCCgccaCGUCggcccaGCUCUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGg---GCAG------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 110514 0.7 0.500835
Target:  5'- gGCGUGCGgGCGCCUgCUGcCGgUCUUc -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCaGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117686 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 148587 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 130411 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 105466 0.7 0.510155
Target:  5'- gGCGggGCGCGCGCCuCCCCGggguaguagggCGCgUCg- -3'
miRNA:   3'- -CGCa-UGUGCGCGG-GGGGCa----------GCG-AGag -5'
21658 3' -60.5 NC_004812.1 + 4903 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 54619 0.7 0.510155
Target:  5'- cGCGaguCGCGCGaCCCCCCG-CGCg--- -3'
miRNA:   3'- -CGCau-GUGCGC-GGGGGGCaGCGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.