miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 151567 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 51148 0.7 0.519547
Target:  5'- cGgGgagGCGCGCGCCCCgCCccgcGUCGUUCcCg -3'
miRNA:   3'- -CgCa--UGUGCGCGGGG-GG----CAGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 26058 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 126067 0.7 0.529006
Target:  5'- cGCGgccGCGCGCccugcgccuGCCCCCCGgCGCcuUCUUc -3'
miRNA:   3'- -CGCa--UGUGCG---------CGGGGGGCaGCG--AGAG- -5'
21658 3' -60.5 NC_004812.1 + 146451 0.7 0.529006
Target:  5'- cGCGaACGCcCcCCCCCCGUCGCcgUCUg -3'
miRNA:   3'- -CGCaUGUGcGcGGGGGGCAGCG--AGAg -5'
21658 3' -60.5 NC_004812.1 + 36235 0.69 0.538528
Target:  5'- cGCGU--ACGCGCCCCCgGcCGCg--- -3'
miRNA:   3'- -CGCAugUGCGCGGGGGgCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 117563 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 148464 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 76442 0.69 0.548108
Target:  5'- uCGUGCAUGCGa---UCGUCGCUCUCc -3'
miRNA:   3'- cGCAUGUGCGCggggGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 137457 0.69 0.548108
Target:  5'- gGCGccgccGC-CGCGCCCCCCGcggCGCUg-- -3'
miRNA:   3'- -CGCa----UGuGCGCGGGGGGCa--GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 73796 0.69 0.557741
Target:  5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3'
miRNA:   3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 149928 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 119027 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 109 0.69 0.567422
Target:  5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3'
miRNA:   3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 85622 0.69 0.567422
Target:  5'- gGCGgccgaccCGCGgGCCCCgCGgUGCUCUCc -3'
miRNA:   3'- -CGCau-----GUGCgCGGGGgGCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 120725 0.69 0.567422
Target:  5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3'
miRNA:   3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 125618 0.69 0.567422
Target:  5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3'
miRNA:   3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 150642 0.69 0.567422
Target:  5'- cGCGUACuCGC-CCCCCCG-CgGC-CUCc -3'
miRNA:   3'- -CGCAUGuGCGcGGGGGGCaG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 73341 0.69 0.567422
Target:  5'- cGCGUGCggcgaGCgGCGCCCCggCCGaCGC-CUCg -3'
miRNA:   3'- -CGCAUG-----UG-CGCGGGG--GGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 19610 0.69 0.567422
Target:  5'- cGCGgcgaaucgcuCGCGcCGCCUCCCGguccaggCGCUCUa -3'
miRNA:   3'- -CGCau--------GUGC-GCGGGGGGCa------GCGAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.