miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 150642 0.69 0.567422
Target:  5'- cGCGUACuCGC-CCCCCCG-CgGC-CUCc -3'
miRNA:   3'- -CGCAUGuGCGcGGGGGGCaG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 19610 0.69 0.567422
Target:  5'- cGCGgcgaaucgcuCGCGcCGCCUCCCGguccaggCGCUCUa -3'
miRNA:   3'- -CGCau--------GUGC-GCGGGGGGCa------GCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 19719 0.69 0.567422
Target:  5'- gGCGUACcCGuCGCCCCCC-UC-CUCg- -3'
miRNA:   3'- -CGCAUGuGC-GCGGGGGGcAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 3434 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 34783 0.69 0.577144
Target:  5'- aGC-UGCGC-CGCCUCCCGcgucgCGCUCUg -3'
miRNA:   3'- -CGcAUGUGcGCGGGGGGCa----GCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 154548 0.69 0.577144
Target:  5'- cGCGggggGCGCgcccccucccccGCGCCCCCCGcCGC-Cg- -3'
miRNA:   3'- -CGCa---UGUG------------CGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 32360 0.69 0.577144
Target:  5'- gGCGccgccGCGCGCGCCCCCCGccaggccCGC-Cg- -3'
miRNA:   3'- -CGCa----UGUGCGCGGGGGGCa------GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 15124 0.69 0.577144
Target:  5'- uUGUaGCGCGCGUCCggCCgCGUCGC-CUCg -3'
miRNA:   3'- cGCA-UGUGCGCGGG--GG-GCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 68887 0.69 0.577144
Target:  5'- gGCGccCGCGcCGCCUCCCGcUCGCggUCg -3'
miRNA:   3'- -CGCauGUGC-GCGGGGGGC-AGCGagAG- -5'
21658 3' -60.5 NC_004812.1 + 34335 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 29039 0.69 0.577144
Target:  5'- cGCGggggGCGCgcccccucccccGCGCCCCCCGcCGC-Cg- -3'
miRNA:   3'- -CGCa---UGUG------------CGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 116034 0.69 0.581043
Target:  5'- cGCcUACuCGCGCCUCCCGaCGCacacacagcccguguUCUCg -3'
miRNA:   3'- -CGcAUGuGCGCGGGGGGCaGCG---------------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 15072 0.69 0.586903
Target:  5'- gGCGgcgACACGuCGCCgCCCGcCgGCUCg- -3'
miRNA:   3'- -CGCa--UGUGC-GCGGgGGGCaG-CGAGag -5'
21658 3' -60.5 NC_004812.1 + 123591 0.69 0.586903
Target:  5'- gGCGgccgagcACACGCGCgCCCgGUCGCcCg- -3'
miRNA:   3'- -CGCa------UGUGCGCGgGGGgCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 1798 0.68 0.596692
Target:  5'- cGCGUGCAuCGgGCCCCggCUGcgCGC-CUCg -3'
miRNA:   3'- -CGCAUGU-GCgCGGGG--GGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 81703 0.68 0.596692
Target:  5'- cGCGccUGCACGCGCgCCUgGaCGCgCUCg -3'
miRNA:   3'- -CGC--AUGUGCGCGgGGGgCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 138151 0.68 0.596692
Target:  5'- cGCGggGC-CGCGcCCCCCCGcCGCg--- -3'
miRNA:   3'- -CGCa-UGuGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 148306 0.68 0.596692
Target:  5'- gGCGUACGCGCGgagCUCCCGgCGCagaUCg -3'
miRNA:   3'- -CGCAUGUGCGCg--GGGGGCaGCGag-AG- -5'
21658 3' -60.5 NC_004812.1 + 127306 0.68 0.596692
Target:  5'- cGCGUGCAuCGgGCCCCggCUGcgCGC-CUCg -3'
miRNA:   3'- -CGCAUGU-GCgCGGGG--GGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 41927 0.68 0.596692
Target:  5'- cGCGgccccGgGCGCGCCCggcaCCGgccCGCUCUUg -3'
miRNA:   3'- -CGCa----UgUGCGCGGGg---GGCa--GCGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.