miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 8704 0.67 0.685066
Target:  5'- gGCGggACGCccuccGCGCCCCCC-UCGCg--- -3'
miRNA:   3'- -CGCa-UGUG-----CGCGGGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 38723 0.67 0.685066
Target:  5'- gGCGUACACGCGCUUCUCcaggGC-CUCc -3'
miRNA:   3'- -CGCAUGUGCGCGGGGGGcag-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 82884 0.67 0.685066
Target:  5'- gGCGgccgACACGCGCaCCUCC-UCGCg--- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 117771 0.67 0.685066
Target:  5'- ---cGgACGCGCCCCCCGgccgCGC-Cg- -3'
miRNA:   3'- cgcaUgUGCGCGGGGGGCa---GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 218 0.67 0.684091
Target:  5'- cGgGU-CGCGCagccccgGCCCCCgCGgcccCGCUCUCc -3'
miRNA:   3'- -CgCAuGUGCG-------CGGGGG-GCa---GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 15293 0.67 0.684091
Target:  5'- -gGUACACGCGCCUcacgucgggggggUCCGUCuucuGCUC-Ca -3'
miRNA:   3'- cgCAUGUGCGCGGG-------------GGGCAG----CGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 83780 0.67 0.675308
Target:  5'- cGCGgccgcuCGCGgggaGCCCCCCGUgccuggUGCUCgUCg -3'
miRNA:   3'- -CGCau----GUGCg---CGGGGGGCA------GCGAG-AG- -5'
21658 3' -60.5 NC_004812.1 + 95068 0.67 0.675308
Target:  5'- aGCGgcUACGCGaCCgCCgCCGUCcggggGCUCUUc -3'
miRNA:   3'- -CGCauGUGCGC-GG-GG-GGCAG-----CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 83733 0.67 0.675308
Target:  5'- cGCGUGCcuggcgGCGCaGCUgCCCG-CGCUgUCc -3'
miRNA:   3'- -CGCAUG------UGCG-CGGgGGGCaGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 121074 0.67 0.675308
Target:  5'- ---cGCcCGCGCCCCCCG-CGCg--- -3'
miRNA:   3'- cgcaUGuGCGCGGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 61237 0.67 0.675308
Target:  5'- cGCGaguCGCuCGUCCCCgCGUCGCcgaugUCUCu -3'
miRNA:   3'- -CGCau-GUGcGCGGGGG-GCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 103261 0.67 0.67433
Target:  5'- cGCGcagGCGCGCgggggcgacggccGCCCCCCGcaCGCUgaCg -3'
miRNA:   3'- -CGCa--UGUGCG-------------CGGGGGGCa-GCGAgaG- -5'
21658 3' -60.5 NC_004812.1 + 82328 0.67 0.67433
Target:  5'- aGCGU-CugGCucaggacGCCCCCCGUgaggccCGCggcCUCg -3'
miRNA:   3'- -CGCAuGugCG-------CGGGGGGCA------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 49859 0.67 0.669437
Target:  5'- aGCG-ACGaGCGCCCCaugacguaguaggccUCGUCGCcCUCg -3'
miRNA:   3'- -CGCaUGUgCGCGGGG---------------GGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 84050 0.67 0.665516
Target:  5'- -gGUACACcgGCGCCCCCCcgaggCGCggUUCc -3'
miRNA:   3'- cgCAUGUG--CGCGGGGGGca---GCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 79070 0.67 0.665516
Target:  5'- cGCGUuuGCuCGuCGCCCCCCGaUC-CUCg- -3'
miRNA:   3'- -CGCA--UGuGC-GCGGGGGGC-AGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 47053 0.67 0.665516
Target:  5'- uGCGUGCGgGCGUCCUgCGUCaGCg--- -3'
miRNA:   3'- -CGCAUGUgCGCGGGGgGCAG-CGagag -5'
21658 3' -60.5 NC_004812.1 + 13079 0.67 0.665516
Target:  5'- cGCGgguCA-GCGCCCCCaugCGCUCg- -3'
miRNA:   3'- -CGCau-GUgCGCGGGGGgcaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 10986 0.67 0.665516
Target:  5'- cCGUGCugGCGCgCCCCGgCGgaC-Ca -3'
miRNA:   3'- cGCAUGugCGCGgGGGGCaGCgaGaG- -5'
21658 3' -60.5 NC_004812.1 + 105858 0.67 0.665516
Target:  5'- gGCGgACACGUacucgGCCCCgCGUUcgccgcagaaGCUCUCc -3'
miRNA:   3'- -CGCaUGUGCG-----CGGGGgGCAG----------CGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.