miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 16500 0.71 0.47244
Target:  5'- cGCGUccgugcuGCGCGCGCCCgCCaUGggcgCGCUCaUCa -3'
miRNA:   3'- -CGCA-------UGUGCGCGGG-GG-GCa---GCGAG-AG- -5'
21658 3' -60.5 NC_004812.1 + 17071 0.79 0.162585
Target:  5'- cGCGg--ACGCGCCCCCCGUggCGCUgUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCA--GCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 17508 0.66 0.723613
Target:  5'- aCGUcGCcgACGCGCCCUCgGUCGCg--- -3'
miRNA:   3'- cGCA-UG--UGCGCGGGGGgCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 18237 0.71 0.473344
Target:  5'- gGCGUACGCGCcCCCgCCCGUCccGCg--- -3'
miRNA:   3'- -CGCAUGUGCGcGGG-GGGCAG--CGagag -5'
21658 3' -60.5 NC_004812.1 + 19225 0.66 0.733088
Target:  5'- aGUGgucCACgGCGcCCCCCCGggGCUCg- -3'
miRNA:   3'- -CGCau-GUG-CGC-GGGGGGCagCGAGag -5'
21658 3' -60.5 NC_004812.1 + 19610 0.69 0.567422
Target:  5'- cGCGgcgaaucgcuCGCGcCGCCUCCCGguccaggCGCUCUa -3'
miRNA:   3'- -CGCau--------GUGC-GCGGGGGGCa------GCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 19719 0.69 0.567422
Target:  5'- gGCGUACcCGuCGCCCCCC-UC-CUCg- -3'
miRNA:   3'- -CGCAUGuGC-GCGGGGGGcAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 20352 0.66 0.714065
Target:  5'- gGCGaaaGCGCGCCUCCgcaaaGUCGCgCUUg -3'
miRNA:   3'- -CGCaugUGCGCGGGGGg----CAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 23661 0.66 0.742483
Target:  5'- gGCGagggGCG-GCGUCCCCgGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGgCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 25542 0.71 0.446633
Target:  5'- cGCGUGCACGCuCUCCgCGggCGC-CUCg -3'
miRNA:   3'- -CGCAUGUGCGcGGGGgGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 25577 0.66 0.733088
Target:  5'- cGCGgaagACgaaGCGCCgCCCCGccUCGUccuUCUCg -3'
miRNA:   3'- -CGCa---UGug-CGCGG-GGGGC--AGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 26058 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 27471 0.67 0.655701
Target:  5'- gGCGgcgcCGCGCGCCCgCCGgcgCGCa--- -3'
miRNA:   3'- -CGCau--GUGCGCGGGgGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 29039 0.69 0.577144
Target:  5'- cGCGggggGCGCgcccccucccccGCGCCCCCCGcCGC-Cg- -3'
miRNA:   3'- -CGCa---UGUG------------CGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 31244 0.66 0.723613
Target:  5'- uGCGUcCACGCGCUCgccaCCC-UCaCUCUCg -3'
miRNA:   3'- -CGCAuGUGCGCGGG----GGGcAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 31312 0.66 0.723613
Target:  5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3'
miRNA:   3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 31380 0.67 0.704453
Target:  5'- uGCGUgcGCACGCGCCUgCUGccCGaaCUCa -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCa-GCgaGAG- -5'
21658 3' -60.5 NC_004812.1 + 31752 0.66 0.714065
Target:  5'- gGCGgggGCGCgGCGCCCgCCCcaCGCcaccgaguUCUCg -3'
miRNA:   3'- -CGCa--UGUG-CGCGGG-GGGcaGCG--------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 32279 0.67 0.704453
Target:  5'- cCGUGCGCGacggccCGCCCCgCGcCGCgcccccUCUCg -3'
miRNA:   3'- cGCAUGUGC------GCGGGGgGCaGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 32360 0.69 0.577144
Target:  5'- gGCGccgccGCGCGCGCCCCCCGccaggccCGC-Cg- -3'
miRNA:   3'- -CGCa----UGUGCGCGGGGGGCa------GCGaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.