miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 34335 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 34783 0.69 0.577144
Target:  5'- aGC-UGCGC-CGCCUCCCGcgucgCGCUCUg -3'
miRNA:   3'- -CGcAUGUGcGCGGGGGGCa----GCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 34930 0.66 0.714065
Target:  5'- cCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3'
miRNA:   3'- cGCAuGu--GCGCGGgGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 35266 0.66 0.714065
Target:  5'- cGCGUgcaacaugGCGCGCGCCCUggCCGagGCgUCg- -3'
miRNA:   3'- -CGCA--------UGUGCGCGGGG--GGCagCG-AGag -5'
21658 3' -60.5 NC_004812.1 + 35360 0.68 0.606505
Target:  5'- gGUGUccgGgGCGaCGCCCCCCGUgGCaaaggaCUCg -3'
miRNA:   3'- -CGCA---UgUGC-GCGGGGGGCAgCGa-----GAG- -5'
21658 3' -60.5 NC_004812.1 + 35477 0.68 0.616336
Target:  5'- gGCGUcgGCGCGCGagaUCCCCGaggggaUCGCgaUCUCc -3'
miRNA:   3'- -CGCA--UGUGCGCg--GGGGGC------AGCG--AGAG- -5'
21658 3' -60.5 NC_004812.1 + 36235 0.69 0.538528
Target:  5'- cGCGU--ACGCGCCCCCgGcCGCg--- -3'
miRNA:   3'- -CGCAugUGCGCGGGGGgCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 37368 0.66 0.751788
Target:  5'- gGCGUACACgcggucgaaGCGCaCCCCCGcggUGCa--- -3'
miRNA:   3'- -CGCAUGUG---------CGCG-GGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 38723 0.67 0.685066
Target:  5'- gGCGUACACGCGCUUCUCcaggGC-CUCc -3'
miRNA:   3'- -CGCAUGUGCGCGGGGGGcag-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 38786 0.71 0.455444
Target:  5'- cGCGcGCACGCGCguggUCUgCGgggCGCUCUCg -3'
miRNA:   3'- -CGCaUGUGCGCG----GGGgGCa--GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 39592 0.73 0.36337
Target:  5'- --cUGCACGCGCCCCUCGUucauguaCGCcagCUCg -3'
miRNA:   3'- cgcAUGUGCGCGGGGGGCA-------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 41156 0.68 0.606505
Target:  5'- gGCGaGCccagcgGCGCGCCgCCaggCGCUCUCg -3'
miRNA:   3'- -CGCaUG------UGCGCGGgGGgcaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 41172 0.71 0.473344
Target:  5'- aGCcccgGCGCGcCGCCCCaaCGUCGCUCg- -3'
miRNA:   3'- -CGca--UGUGC-GCGGGGg-GCAGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 41825 0.75 0.286307
Target:  5'- uGUGUACACGCcCUCCCCGUaCGCcUUCg -3'
miRNA:   3'- -CGCAUGUGCGcGGGGGGCA-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 41927 0.68 0.596692
Target:  5'- cGCGgccccGgGCGCGCCCggcaCCGgccCGCUCUUg -3'
miRNA:   3'- -CGCa----UgUGCGCGGGg---GGCa--GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 42089 0.66 0.760079
Target:  5'- cGCGUccGCcgacccgACGCGCCCCggaguccgCCGUCGCcCg- -3'
miRNA:   3'- -CGCA--UG-------UGCGCGGGG--------GGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 44025 0.66 0.751788
Target:  5'- gGCGU-CGucCGCGUCCUCgaaGUCGCUgUCg -3'
miRNA:   3'- -CGCAuGU--GCGCGGGGGg--CAGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 44052 0.74 0.319959
Target:  5'- cGCGUcggACgGCGCGCCCCCC--CGCUCg- -3'
miRNA:   3'- -CGCA---UG-UGCGCGGGGGGcaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 46501 0.68 0.627163
Target:  5'- cGCGUuuucuCcCGCGCCCCCCGggggggcccacggggC-CUCUCc -3'
miRNA:   3'- -CGCAu----GuGCGCGGGGGGCa--------------GcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 46864 0.72 0.395856
Target:  5'- cGCGUGCACGCGCCaCgUCaGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-GgGG-CAGCGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.