miRNA display CGI


Results 81 - 100 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 47053 0.67 0.665516
Target:  5'- uGCGUGCGgGCGUCCUgCGUCaGCg--- -3'
miRNA:   3'- -CGCAUGUgCGCGGGGgGCAG-CGagag -5'
21658 3' -60.5 NC_004812.1 + 47150 0.7 0.500835
Target:  5'- aGCccGCGgGCGCCCCCgCGcCGCcCUCu -3'
miRNA:   3'- -CGcaUGUgCGCGGGGG-GCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 47697 0.66 0.760995
Target:  5'- cGCGgcCGCGgGCCCCCgGgCGUaCUg -3'
miRNA:   3'- -CGCauGUGCgCGGGGGgCaGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 49859 0.67 0.669437
Target:  5'- aGCG-ACGaGCGCCCCaugacguaguaggccUCGUCGCcCUCg -3'
miRNA:   3'- -CGCaUGUgCGCGGGG---------------GGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 50091 0.66 0.723613
Target:  5'- cGCGUGCugGcCGUgguggacgaCCCCCGggggcccuucuUCGCggggCUCa -3'
miRNA:   3'- -CGCAUGugC-GCG---------GGGGGC-----------AGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 51148 0.7 0.519547
Target:  5'- cGgGgagGCGCGCGCCCCgCCccgcGUCGUUCcCg -3'
miRNA:   3'- -CgCa--UGUGCGCGGGG-GG----CAGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 51555 0.66 0.749006
Target:  5'- aGUGUGCGCccgcggccggagcgGCGCCUCCCaUCGCg--- -3'
miRNA:   3'- -CGCAUGUG--------------CGCGGGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 51641 0.67 0.704453
Target:  5'- cGCGUGCGCGCcgagaGCCccucuCCCCGcCGCg--- -3'
miRNA:   3'- -CGCAUGUGCG-----CGG-----GGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 52311 0.67 0.655701
Target:  5'- cCGUccccGC-CGuCGCCCgccggcgacggCCCGUCGCUCUUg -3'
miRNA:   3'- cGCA----UGuGC-GCGGG-----------GGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 52393 0.76 0.227478
Target:  5'- gGCacACACGCuccuuCCCCCCGcUCGCUCUCg -3'
miRNA:   3'- -CGcaUGUGCGc----GGGGGGC-AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 53444 0.66 0.733088
Target:  5'- cGCGcugACG-GCGgCCCCCG-CGCUC-Ca -3'
miRNA:   3'- -CGCa--UGUgCGCgGGGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 53786 0.73 0.36414
Target:  5'- gGCGUggAgGCGCGCCgCCCCGUggagaggucgCGCUCg- -3'
miRNA:   3'- -CGCA--UgUGCGCGG-GGGGCA----------GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 54619 0.7 0.510155
Target:  5'- cGCGaguCGCGCGaCCCCCCG-CGCg--- -3'
miRNA:   3'- -CGCau-GUGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 55659 0.7 0.500835
Target:  5'- cGCGgcgGCGCGCCCCgccaCGUCggcccaGCUCUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGg---GCAG------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 55697 0.75 0.273648
Target:  5'- gGCGguggGCGCGCGCCUgcaCCCG-CGCUCg- -3'
miRNA:   3'- -CGCa---UGUGCGCGGG---GGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 55820 0.75 0.286307
Target:  5'- cGCG-GCGCaGCGCCuCUUCGUCGCUCUg -3'
miRNA:   3'- -CGCaUGUG-CGCGG-GGGGCAGCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 55986 0.67 0.704453
Target:  5'- cCGUGCGCGCGaUCCUggCCGgcgcccUCGUUCUCc -3'
miRNA:   3'- cGCAUGUGCGC-GGGG--GGC------AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 56255 0.67 0.655701
Target:  5'- cGCGgGgGCGCGCCCCUg--CGC-CUCg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGgcaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 57962 0.71 0.455444
Target:  5'- cGCGUGCGCGCGUCgCgCCCGggCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-G-GGGCa-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 59287 0.72 0.404059
Target:  5'- cGCGgGCGCGCGgcaCCCgCCCGcCGCgagCUCg -3'
miRNA:   3'- -CGCaUGUGCGC---GGG-GGGCaGCGa--GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.