miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 59669 0.68 0.606505
Target:  5'- gGCGUGC-CGCGUCUCCagGUCGCa--- -3'
miRNA:   3'- -CGCAUGuGCGCGGGGGg-CAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 60341 0.66 0.751788
Target:  5'- cGCGgGgGCGCcagGCCCgCCCG-CGC-CUCg -3'
miRNA:   3'- -CGCaUgUGCG---CGGG-GGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 61237 0.67 0.675308
Target:  5'- cGCGaguCGCuCGUCCCCgCGUCGCcgaugUCUCu -3'
miRNA:   3'- -CGCau-GUGcGCGGGGG-GCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 62497 0.67 0.694783
Target:  5'- cGCGgacCACGCGCCCgCCGgauUCGCc--- -3'
miRNA:   3'- -CGCau-GUGCGCGGGgGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 62911 0.73 0.334227
Target:  5'- cGCGUGCACGCGCggaacgggcgCgCCCUGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCG----------G-GGGGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 63962 0.74 0.319959
Target:  5'- cGUGUACACGUGCCUgCUG-CGC-CUCg -3'
miRNA:   3'- -CGCAUGUGCGCGGGgGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 64730 0.75 0.279921
Target:  5'- cGCGgGCAUGCGCgCCCCCGggcCGUaCUCg -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCa--GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 65402 0.67 0.694783
Target:  5'- cGCGagcuggACGcCGCGCCCCCCGcccccgagccCGCguccCUCg -3'
miRNA:   3'- -CGCa-----UGU-GCGCGGGGGGCa---------GCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 65523 0.7 0.500835
Target:  5'- cGCGcccCugGCGCCCCCCcUCGCccccggUCUUc -3'
miRNA:   3'- -CGCau-GugCGCGGGGGGcAGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 65913 0.66 0.760995
Target:  5'- aCGU-C-CGCGUCCgUCGUCGUUCUUu -3'
miRNA:   3'- cGCAuGuGCGCGGGgGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 66848 0.68 0.616336
Target:  5'- aCGUACucgcgGCGCGCCUCUCGUUGUUgUg -3'
miRNA:   3'- cGCAUG-----UGCGCGGGGGGCAGCGAgAg -5'
21658 3' -60.5 NC_004812.1 + 67487 0.73 0.371902
Target:  5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3'
miRNA:   3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 68887 0.69 0.577144
Target:  5'- gGCGccCGCGcCGCCUCCCGcUCGCggUCg -3'
miRNA:   3'- -CGCauGUGC-GCGGGGGGC-AGCGagAG- -5'
21658 3' -60.5 NC_004812.1 + 71299 0.73 0.36414
Target:  5'- gGCGccAC-CGaGCCCCCCGUCGCgagaCUCg -3'
miRNA:   3'- -CGCa-UGuGCgCGGGGGGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 71468 0.67 0.694783
Target:  5'- cGCGUcCAgGCGCgCCCCCGcccgCGCg--- -3'
miRNA:   3'- -CGCAuGUgCGCG-GGGGGCa---GCGagag -5'
21658 3' -60.5 NC_004812.1 + 71586 0.68 0.626178
Target:  5'- aGCG-ACACGaGCCCCgCGcgcguacagcCGCUCUCg -3'
miRNA:   3'- -CGCaUGUGCgCGGGGgGCa---------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 71976 0.66 0.723613
Target:  5'- cGCGggaggcuCACGCGCCCCggggcuggggcgCgGUCG-UCUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGG------------GgCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 72749 0.76 0.238364
Target:  5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3'
miRNA:   3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 73341 0.69 0.567422
Target:  5'- cGCGUGCggcgaGCgGCGCCCCggCCGaCGC-CUCg -3'
miRNA:   3'- -CGCAUG-----UG-CGCGGGG--GGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 73414 0.75 0.267489
Target:  5'- cGCGgcCGcCGCGCCUCCCGcCGCgagCUCc -3'
miRNA:   3'- -CGCauGU-GCGCGGGGGGCaGCGa--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.