miRNA display CGI


Results 121 - 140 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 73767 0.73 0.36414
Target:  5'- cGCGcucgGCGCGCGCaCCCCCGgguaCGCUg-- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGCa---GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 73796 0.69 0.557741
Target:  5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3'
miRNA:   3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 74583 0.68 0.645868
Target:  5'- gGCGcccgACgGCGUcCCCCCCGccgUGCUCUCc -3'
miRNA:   3'- -CGCa---UG-UGCGcGGGGGGCa--GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 76442 0.69 0.548108
Target:  5'- uCGUGCAUGCGa---UCGUCGCUCUCc -3'
miRNA:   3'- cGCAUGUGCGCggggGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 79070 0.67 0.665516
Target:  5'- cGCGUuuGCuCGuCGCCCCCCGaUC-CUCg- -3'
miRNA:   3'- -CGCA--UGuGC-GCGGGGGGC-AGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 80142 0.66 0.742483
Target:  5'- -----gGCGUGCCCCCuggccuuccuCGUCGCcCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGG----------GCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 81482 1.11 0.000934
Target:  5'- gGCGUACACGCGCCCCCCGUCGCUCUCg -3'
miRNA:   3'- -CGCAUGUGCGCGGGGGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 81671 0.68 0.626178
Target:  5'- cGCG-GCGCGCGacggcUCCCCCGaccCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGC-----GGGGGGCa--GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 81703 0.68 0.596692
Target:  5'- cGCGccUGCACGCGCgCCUgGaCGCgCUCg -3'
miRNA:   3'- -CGC--AUGUGCGCGgGGGgCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 82328 0.67 0.67433
Target:  5'- aGCGU-CugGCucaggacGCCCCCCGUgaggccCGCggcCUCg -3'
miRNA:   3'- -CGCAuGugCG-------CGGGGGGCA------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 82543 0.67 0.655701
Target:  5'- gGCGgcccGCGCGCGCCCgCCGcugcCGCccgaggggCUCg -3'
miRNA:   3'- -CGCa---UGUGCGCGGGgGGCa---GCGa-------GAG- -5'
21658 3' -60.5 NC_004812.1 + 82814 0.68 0.636024
Target:  5'- cGCGggGCGCcgGCGCCCgCCCGcUCGCg--- -3'
miRNA:   3'- -CGCa-UGUG--CGCGGG-GGGC-AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 82884 0.67 0.685066
Target:  5'- gGCGgccgACACGCGCaCCUCC-UCGCg--- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 83733 0.67 0.675308
Target:  5'- cGCGUGCcuggcgGCGCaGCUgCCCG-CGCUgUCc -3'
miRNA:   3'- -CGCAUG------UGCG-CGGgGGGCaGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 83780 0.67 0.675308
Target:  5'- cGCGgccgcuCGCGgggaGCCCCCCGUgccuggUGCUCgUCg -3'
miRNA:   3'- -CGCau----GUGCg---CGGGGGGCA------GCGAG-AG- -5'
21658 3' -60.5 NC_004812.1 + 83919 0.67 0.694783
Target:  5'- cCGUu--CGUGUCCCCCGgcgcggaCGUUCUCg -3'
miRNA:   3'- cGCAuguGCGCGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 84050 0.67 0.665516
Target:  5'- -gGUACACcgGCGCCCCCCcgaggCGCggUUCc -3'
miRNA:   3'- cgCAUGUG--CGCGGGGGGca---GCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 84111 0.67 0.704453
Target:  5'- gGCGgcgGCGCGCCCCCCGaccccgaggCGC-Cg- -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCa--------GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 84709 0.72 0.404059
Target:  5'- cGCGgcgcCGCGCcgcccgGCCCgCCGUCGgCUCUCu -3'
miRNA:   3'- -CGCau--GUGCG------CGGGgGGCAGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 85622 0.69 0.567422
Target:  5'- gGCGgccgaccCGCGgGCCCCgCGgUGCUCUCc -3'
miRNA:   3'- -CGCau-----GUGCgCGGGGgGCaGCGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.