miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 147913 0.66 0.723613
Target:  5'- cGCGga-GgGCGUCCCgCCGUCGCa--- -3'
miRNA:   3'- -CGCaugUgCGCGGGG-GGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 146451 0.7 0.529006
Target:  5'- cGCGaACGCcCcCCCCCCGUCGCcgUCUg -3'
miRNA:   3'- -CGCaUGUGcGcGGGGGGCAGCG--AGAg -5'
21658 3' -60.5 NC_004812.1 + 146358 0.66 0.760995
Target:  5'- uGCGU-CGCgGCGUucgUCCUCGUCGCgcugaUCUCa -3'
miRNA:   3'- -CGCAuGUG-CGCG---GGGGGCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 144248 0.66 0.760995
Target:  5'- cGCGgccGgGCGCGCCCCCCGcCa----- -3'
miRNA:   3'- -CGCa--UgUGCGCGGGGGGCaGcgagag -5'
21658 3' -60.5 NC_004812.1 + 144102 0.73 0.371902
Target:  5'- gGCGaACAUGCGCCCCCCaGUacggGC-CUCc -3'
miRNA:   3'- -CGCaUGUGCGCGGGGGG-CAg---CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 142671 0.68 0.63504
Target:  5'- uGCGUGgGCuCGCCCacgcagaCCgCGUCGCUCg- -3'
miRNA:   3'- -CGCAUgUGcGCGGG-------GG-GCAGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 142499 0.71 0.464349
Target:  5'- gGCGUucacGCacgGCGCGCUCCCCG-CGUUCa- -3'
miRNA:   3'- -CGCA----UG---UGCGCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 140874 0.67 0.703488
Target:  5'- gGCGgccccCGCG-GCCCCucgaucgCCGUCGUUCUUg -3'
miRNA:   3'- -CGCau---GUGCgCGGGG-------GGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 139849 0.66 0.760995
Target:  5'- cGCGUcuucggGCcCGCGgCCCCCGgggCGCcCUg -3'
miRNA:   3'- -CGCA------UGuGCGCgGGGGGCa--GCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 138822 0.68 0.645868
Target:  5'- aUGUGCGCGCaCCCaCCC--CGUUCUCg -3'
miRNA:   3'- cGCAUGUGCGcGGG-GGGcaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 138416 0.66 0.742483
Target:  5'- cGCGUGgACGCggggggcugccgGCgCCCCaUCGCcCUCa -3'
miRNA:   3'- -CGCAUgUGCG------------CGgGGGGcAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 138151 0.68 0.596692
Target:  5'- cGCGggGC-CGCGcCCCCCCGcCGCg--- -3'
miRNA:   3'- -CGCa-UGuGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 137457 0.69 0.548108
Target:  5'- gGCGccgccGC-CGCGCCCCCCGcggCGCUg-- -3'
miRNA:   3'- -CGCa----UGuGCGCGGGGGGCa--GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 136944 0.67 0.694783
Target:  5'- uCGUcCcCGCGgCCCCCGgCGgUCUCa -3'
miRNA:   3'- cGCAuGuGCGCgGGGGGCaGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 133239 0.66 0.751788
Target:  5'- cCGggAUcCGCGCCCgUCGUC-CUCUCg -3'
miRNA:   3'- cGCa-UGuGCGCGGGgGGCAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 133152 0.68 0.636024
Target:  5'- ----cCGCGCGCCUCgCCGacgaccCGCUCUCg -3'
miRNA:   3'- cgcauGUGCGCGGGG-GGCa-----GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 132757 0.71 0.464349
Target:  5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 132556 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 131516 0.66 0.751788
Target:  5'- cGCGUcgGCGCgcggcgGCGCCgCCCCGUCGa---- -3'
miRNA:   3'- -CGCA--UGUG------CGCGG-GGGGCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 131255 0.68 0.645868
Target:  5'- cGCacACACGCGCCUCCgGcCcCUCUCc -3'
miRNA:   3'- -CGcaUGUGCGCGGGGGgCaGcGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.