miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 125078 0.66 0.714065
Target:  5'- cGCGUGCagaccGCGUGCCUCCgGgCGCUg-- -3'
miRNA:   3'- -CGCAUG-----UGCGCGGGGGgCaGCGAgag -5'
21658 3' -60.5 NC_004812.1 + 124862 0.71 0.455444
Target:  5'- gGCGgGCGcCGCGCCCCCgcccCG-CGcCUCUCg -3'
miRNA:   3'- -CGCaUGU-GCGCGGGGG----GCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 124250 0.66 0.750861
Target:  5'- gGCGggggGCGCGCGCggcggcgCCCCCGUCuccggagaGCUa-- -3'
miRNA:   3'- -CGCa---UGUGCGCG-------GGGGGCAG--------CGAgag -5'
21658 3' -60.5 NC_004812.1 + 123591 0.69 0.586903
Target:  5'- gGCGgccgagcACACGCGCgCCCgGUCGCcCg- -3'
miRNA:   3'- -CGCa------UGUGCGCGgGGGgCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 123364 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 121981 0.73 0.334227
Target:  5'- gGUGUGCACGUucgacgGCCCCgCCGUCGUgcgaUCg -3'
miRNA:   3'- -CGCAUGUGCG------CGGGG-GGCAGCGag--AG- -5'
21658 3' -60.5 NC_004812.1 + 121074 0.67 0.675308
Target:  5'- ---cGCcCGCGCCCCCCG-CGCg--- -3'
miRNA:   3'- cgcaUGuGCGCGGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 120725 0.69 0.567422
Target:  5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3'
miRNA:   3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 119833 0.67 0.655701
Target:  5'- cCGcGCcCGCGCCCCCCGgccCGCg--- -3'
miRNA:   3'- cGCaUGuGCGCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 119741 0.75 0.261442
Target:  5'- cGCGUACuCGC-CCCCCCG-CGC-CUCc -3'
miRNA:   3'- -CGCAUGuGCGcGGGGGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 119357 0.66 0.742483
Target:  5'- gGCGggcgGCGCGCcugccGCCCCCUGcUGCccCUCc -3'
miRNA:   3'- -CGCa---UGUGCG-----CGGGGGGCaGCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 119027 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 118917 0.71 0.437917
Target:  5'- -----gGCGCGCCCCCCGagGCacggCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 117771 0.67 0.685066
Target:  5'- ---cGgACGCGCCCCCCGgccgCGC-Cg- -3'
miRNA:   3'- cgcaUgUGCGCGGGGGGCa---GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 117736 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117686 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 117563 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117498 0.84 0.074472
Target:  5'- cGCGUccgACGCGgGCCCCCgGcCGCUCUCg -3'
miRNA:   3'- -CGCA---UGUGCgCGGGGGgCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 117252 0.71 0.473344
Target:  5'- gGCGUACcCGgGCCCgCCGagCGCUC-Cg -3'
miRNA:   3'- -CGCAUGuGCgCGGGgGGCa-GCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 116510 0.68 0.626178
Target:  5'- cGCGgacggACGCGCGCCCggccgCCCGcCGCcCg- -3'
miRNA:   3'- -CGCa----UGUGCGCGGG-----GGGCaGCGaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.