miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 116034 0.69 0.581043
Target:  5'- cGCcUACuCGCGCCUCCCGaCGCacacacagcccguguUCUCg -3'
miRNA:   3'- -CGcAUGuGCGCGGGGGGCaGCG---------------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 114869 0.74 0.327036
Target:  5'- gGCGcGCACGCGCaCCCCCGUCa----- -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCAGcgagag -5'
21658 3' -60.5 NC_004812.1 + 113445 0.67 0.685066
Target:  5'- aGCGUGgACGUGCgUCCCGUCuCUgUg -3'
miRNA:   3'- -CGCAUgUGCGCGgGGGGCAGcGAgAg -5'
21658 3' -60.5 NC_004812.1 + 113035 0.72 0.395856
Target:  5'- gGCGUugACgucagGCGCCCCCUGUU--UCUCa -3'
miRNA:   3'- -CGCAugUG-----CGCGGGGGGCAGcgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 112389 0.66 0.751788
Target:  5'- gGCGgccACACGCGUUCgCCCGUcCGCg--- -3'
miRNA:   3'- -CGCa--UGUGCGCGGG-GGGCA-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 111641 0.73 0.348955
Target:  5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3'
miRNA:   3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 111435 0.71 0.455444
Target:  5'- uGgGUgacGCACGCGCccgucuggaaCCCCCGcUCGCUCg- -3'
miRNA:   3'- -CgCA---UGUGCGCG----------GGGGGC-AGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 110514 0.7 0.500835
Target:  5'- gGCGUGCGgGCGCCUgCUGcCGgUCUUc -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCaGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 109760 0.71 0.473344
Target:  5'- cGCGUGCACGCGCgcaaCCCCUGaCgGCcccCUCg -3'
miRNA:   3'- -CGCAUGUGCGCG----GGGGGCaG-CGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 106532 0.68 0.645868
Target:  5'- gGCcaGCACGCGCCCCaCC-UCGCa--- -3'
miRNA:   3'- -CGcaUGUGCGCGGGG-GGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 106234 0.73 0.341534
Target:  5'- -gGUGCACGCGCCCCCggCGUCGg---- -3'
miRNA:   3'- cgCAUGUGCGCGGGGG--GCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 106137 0.76 0.232867
Target:  5'- gGCGUccACACGCGCCCgCCGagGCcgagCUCg -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 105858 0.67 0.665516
Target:  5'- gGCGgACACGUacucgGCCCCgCGUUcgccgcagaaGCUCUCc -3'
miRNA:   3'- -CGCaUGUGCG-----CGGGGgGCAG----------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 105466 0.7 0.510155
Target:  5'- gGCGggGCGCGCGCCuCCCCGggguaguagggCGCgUCg- -3'
miRNA:   3'- -CGCa-UGUGCGCGG-GGGGCa----------GCG-AGag -5'
21658 3' -60.5 NC_004812.1 + 104720 0.66 0.742483
Target:  5'- uGCGUGgccgcCACGCGCCCCacggCCG-CGCa--- -3'
miRNA:   3'- -CGCAU-----GUGCGCGGGG----GGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 103594 0.71 0.473344
Target:  5'- cGCGUGCcCGCGCgCCCCGggacgUGCUa-- -3'
miRNA:   3'- -CGCAUGuGCGCGgGGGGCa----GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 103261 0.67 0.67433
Target:  5'- cGCGcagGCGCGCgggggcgacggccGCCCCCCGcaCGCUgaCg -3'
miRNA:   3'- -CGCa--UGUGCG-------------CGGGGGGCa-GCGAgaG- -5'
21658 3' -60.5 NC_004812.1 + 103045 0.67 0.704453
Target:  5'- gGCuGUACGCGUGCUCCCgGagcaccucggCGCcCUCg -3'
miRNA:   3'- -CG-CAUGUGCGCGGGGGgCa---------GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 102956 0.67 0.694783
Target:  5'- uGC-UGCGCGCcgaguacgGCCCCUCGUucCGCUuCUCc -3'
miRNA:   3'- -CGcAUGUGCG--------CGGGGGGCA--GCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 102756 0.67 0.665516
Target:  5'- cGCGUAgGCgGCGgcgucgucgagcCCCCCCG-CGUggUCUCg -3'
miRNA:   3'- -CGCAUgUG-CGC------------GGGGGGCaGCG--AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.