miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 102117 0.77 0.206967
Target:  5'- cCGUGC-CGCcgGCCCCgCCGUCGCUgUCg -3'
miRNA:   3'- cGCAUGuGCG--CGGGG-GGCAGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 101330 0.66 0.751788
Target:  5'- gGCGUGCAgGCGCUCgCCGcagaggcgggCGUUCg- -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCa---------GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 99027 0.75 0.261442
Target:  5'- gGCGgGCcuCGCGCgCCCCGUCucgGCUCUCu -3'
miRNA:   3'- -CGCaUGu-GCGCGgGGGGCAG---CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 98336 0.66 0.760995
Target:  5'- cGCGUACGC-CGaCCggCCGUCGUcCUCg -3'
miRNA:   3'- -CGCAUGUGcGC-GGggGGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 96940 0.66 0.732145
Target:  5'- cGCGgcaACGCgGCGCCCgcgccggCCCGUCcgUCUCa -3'
miRNA:   3'- -CGCa--UGUG-CGCGGG-------GGGCAGcgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 96541 0.66 0.742483
Target:  5'- cGCGUGCGCucCGCCCUgccgCUGUCGCg--- -3'
miRNA:   3'- -CGCAUGUGc-GCGGGG----GGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 96273 0.66 0.751788
Target:  5'- gGCGggcCugGCGCCCCCg--CGCaacCUCa -3'
miRNA:   3'- -CGCau-GugCGCGGGGGgcaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 95783 0.66 0.723613
Target:  5'- uGCGa--GCGCGCCCgCCGgcaguUCgGUUCUCg -3'
miRNA:   3'- -CGCaugUGCGCGGGgGGC-----AG-CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 95068 0.67 0.675308
Target:  5'- aGCGgcUACGCGaCCgCCgCCGUCcggggGCUCUUc -3'
miRNA:   3'- -CGCauGUGCGC-GG-GG-GGCAG-----CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 94896 0.71 0.464349
Target:  5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 94436 0.71 0.437917
Target:  5'- cUGUuCGCG-GCCCCCCGgcCGCUCUUc -3'
miRNA:   3'- cGCAuGUGCgCGGGGGGCa-GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 94029 0.71 0.437917
Target:  5'- gGCGUGCccgGCGUGUgCCCCGUgcugCGCgugCUCg -3'
miRNA:   3'- -CGCAUG---UGCGCGgGGGGCA----GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 93662 0.68 0.626178
Target:  5'- uCGUugAUGCGgaCCCCCGcgugUCGCcCUCg -3'
miRNA:   3'- cGCAugUGCGCg-GGGGGC----AGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 92486 0.68 0.644883
Target:  5'- cGCGUcCGCGUccucCCCCCCGUCuGCcgcggcgUCUCc -3'
miRNA:   3'- -CGCAuGUGCGc---GGGGGGCAG-CG-------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 90650 0.66 0.751788
Target:  5'- aGCGa--GCGCGCCagguCCUCGUCGCgggcgUCUUg -3'
miRNA:   3'- -CGCaugUGCGCGG----GGGGCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 90495 0.66 0.714065
Target:  5'- gGCGgcgGCGCcuGCGaCCCCCGcCuGCUCUUc -3'
miRNA:   3'- -CGCa--UGUG--CGCgGGGGGCaG-CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 89956 0.72 0.404059
Target:  5'- aGCGgcgGCGCGCCUCCCGacgCGC-CUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCa--GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 86997 0.71 0.452791
Target:  5'- gGCGgggGCACGCaccaccacccgcggGCCaCCgCCGUCGCgCUCg -3'
miRNA:   3'- -CGCa--UGUGCG--------------CGG-GG-GGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 86863 0.7 0.49159
Target:  5'- aGCGcACugGUGCCCCCCGgUGC-Cg- -3'
miRNA:   3'- -CGCaUGugCGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 85775 0.67 0.655701
Target:  5'- uCGUGgGCGuCGUCCCUCG-CGCUC-Ca -3'
miRNA:   3'- cGCAUgUGC-GCGGGGGGCaGCGAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.