Results 41 - 60 of 260 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 73414 | 0.75 | 0.267489 |
Target: 5'- cGCGgcCGcCGCGCCUCCCGcCGCgagCUCc -3' miRNA: 3'- -CGCauGU-GCGCGGGGGGCaGCGa--GAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 119741 | 0.75 | 0.261442 |
Target: 5'- cGCGUACuCGC-CCCCCCG-CGC-CUCc -3' miRNA: 3'- -CGCAUGuGCGcGGGGGGCaGCGaGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 102117 | 0.77 | 0.206967 |
Target: 5'- cCGUGC-CGCcgGCCCCgCCGUCGCUgUCg -3' miRNA: 3'- cGCAUGuGCG--CGGGG-GGCAGCGAgAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 123364 | 0.78 | 0.170716 |
Target: 5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3' miRNA: 3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 117498 | 0.84 | 0.074472 |
Target: 5'- cGCGUccgACGCGgGCCCCCgGcCGCUCUCg -3' miRNA: 3'- -CGCA---UGUGCgCGGGGGgCaGCGAGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 132556 | 0.73 | 0.348955 |
Target: 5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3' miRNA: 3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 39592 | 0.73 | 0.36337 |
Target: 5'- --cUGCACGCGCCCCUCGUucauguaCGCcagCUCg -3' miRNA: 3'- cgcAUGUGCGCGGGGGGCA-------GCGa--GAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 117252 | 0.71 | 0.473344 |
Target: 5'- gGCGUACcCGgGCCCgCCGagCGCUC-Cg -3' miRNA: 3'- -CGCAUGuGCgCGGGgGGCa-GCGAGaG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 41172 | 0.71 | 0.473344 |
Target: 5'- aGCcccgGCGCGcCGCCCCaaCGUCGCUCg- -3' miRNA: 3'- -CGca--UGUGC-GCGGGGg-GCAGCGAGag -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 16500 | 0.71 | 0.47244 |
Target: 5'- cGCGUccgugcuGCGCGCGCCCgCCaUGggcgCGCUCaUCa -3' miRNA: 3'- -CGCA-------UGUGCGCGGG-GG-GCa---GCGAG-AG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 132757 | 0.71 | 0.464349 |
Target: 5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3' miRNA: 3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 38786 | 0.71 | 0.455444 |
Target: 5'- cGCGcGCACGCGCguggUCUgCGgggCGCUCUCg -3' miRNA: 3'- -CGCaUGUGCGCG----GGGgGCa--GCGAGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 25542 | 0.71 | 0.446633 |
Target: 5'- cGCGUGCACGCuCUCCgCGggCGC-CUCg -3' miRNA: 3'- -CGCAUGUGCGcGGGGgGCa-GCGaGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 118917 | 0.71 | 0.437917 |
Target: 5'- -----gGCGCGCCCCCCGagGCacggCUCg -3' miRNA: 3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 94436 | 0.71 | 0.437917 |
Target: 5'- cUGUuCGCG-GCCCCCCGgcCGCUCUUc -3' miRNA: 3'- cGCAuGUGCgCGGGGGGCa-GCGAGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 4028 | 0.71 | 0.429299 |
Target: 5'- cGCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3' miRNA: 3'- -CGCAuGu--GCGCGGgGGGCaGCGAGaG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 67487 | 0.73 | 0.371902 |
Target: 5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3' miRNA: 3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 144102 | 0.73 | 0.371902 |
Target: 5'- gGCGaACAUGCGCCCCCCaGUacggGC-CUCc -3' miRNA: 3'- -CGCaUGUGCGCGGGGGG-CAg---CGaGAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 71299 | 0.73 | 0.36414 |
Target: 5'- gGCGccAC-CGaGCCCCCCGUCGCgagaCUCg -3' miRNA: 3'- -CGCa-UGuGCgCGGGGGGCAGCGa---GAG- -5' |
|||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 53786 | 0.73 | 0.36414 |
Target: 5'- gGCGUggAgGCGCGCCgCCCCGUggagaggucgCGCUCg- -3' miRNA: 3'- -CGCA--UgUGCGCGG-GGGGCA----------GCGAGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home