miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 67487 0.73 0.371902
Target:  5'- cGCGgGCugGCGCCCgcgggCCGUCG-UCUCg -3'
miRNA:   3'- -CGCaUGugCGCGGGg----GGCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 4028 0.71 0.429299
Target:  5'- cGCGUcCucuCGCGCCgCCCGcCGCUC-Cg -3'
miRNA:   3'- -CGCAuGu--GCGCGGgGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 127569 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 10431 0.7 0.49067
Target:  5'- cGCGUcCAcCGCGUCCucaccuacucgcaCCCGUCGCcgcUCUCg -3'
miRNA:   3'- -CGCAuGU-GCGCGGG-------------GGGCAGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 117686 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 110514 0.7 0.500835
Target:  5'- gGCGUGCGgGCGCCUgCUGcCGgUCUUc -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCaGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 55659 0.7 0.500835
Target:  5'- cGCGgcgGCGCGCCCCgccaCGUCggcccaGCUCUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGg---GCAG------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 130411 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 151567 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 51148 0.7 0.519547
Target:  5'- cGgGgagGCGCGCGCCCCgCCccgcGUCGUUCcCg -3'
miRNA:   3'- -CgCa--UGUGCGCGGGG-GG----CAGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 109760 0.71 0.473344
Target:  5'- cGCGUGCACGCGCgcaaCCCCUGaCgGCcccCUCg -3'
miRNA:   3'- -CGCAUGUGCGCG----GGGGGCaG-CGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 126862 0.71 0.473344
Target:  5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3'
miRNA:   3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 94436 0.71 0.437917
Target:  5'- cUGUuCGCG-GCCCCCCGgcCGCUCUUc -3'
miRNA:   3'- cGCAuGUGCgCGGGGGGCa-GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 118917 0.71 0.437917
Target:  5'- -----gGCGCGCCCCCCGagGCacggCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 25542 0.71 0.446633
Target:  5'- cGCGUGCACGCuCUCCgCGggCGC-CUCg -3'
miRNA:   3'- -CGCAUGUGCGcGGGGgGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 38786 0.71 0.455444
Target:  5'- cGCGcGCACGCGCguggUCUgCGgggCGCUCUCg -3'
miRNA:   3'- -CGCaUGUGCGCG----GGGgGCa--GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 132757 0.71 0.464349
Target:  5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 16500 0.71 0.47244
Target:  5'- cGCGUccgugcuGCGCGCGCCCgCCaUGggcgCGCUCaUCa -3'
miRNA:   3'- -CGCA-------UGUGCGCGGG-GG-GCa---GCGAG-AG- -5'
21658 3' -60.5 NC_004812.1 + 41172 0.71 0.473344
Target:  5'- aGCcccgGCGCGcCGCCCCaaCGUCGCUCg- -3'
miRNA:   3'- -CGca--UGUGC-GCGGGGg-GCAGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 117252 0.71 0.473344
Target:  5'- gGCGUACcCGgGCCCgCCGagCGCUC-Cg -3'
miRNA:   3'- -CGCAUGuGCgCGGGgGGCa-GCGAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.