Results 81 - 100 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 73796 | 0.69 | 0.557741 |
Target: 5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3' miRNA: 3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 119027 | 0.69 | 0.561608 |
Target: 5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3' miRNA: 3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 85622 | 0.69 | 0.567422 |
Target: 5'- gGCGgccgaccCGCGgGCCCCgCGgUGCUCUCc -3' miRNA: 3'- -CGCau-----GUGCgCGGGGgGCaGCGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 120725 | 0.69 | 0.567422 |
Target: 5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3' miRNA: 3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 125618 | 0.69 | 0.567422 |
Target: 5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3' miRNA: 3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 34783 | 0.69 | 0.577144 |
Target: 5'- aGC-UGCGC-CGCCUCCCGcgucgCGCUCUg -3' miRNA: 3'- -CGcAUGUGcGCGGGGGGCa----GCGAGAg -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 3434 | 0.69 | 0.577144 |
Target: 5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3' miRNA: 3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 51148 | 0.7 | 0.519547 |
Target: 5'- cGgGgagGCGCGCGCCCCgCCccgcGUCGUUCcCg -3' miRNA: 3'- -CgCa--UGUGCGCGGGG-GG----CAGCGAGaG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 151567 | 0.7 | 0.519547 |
Target: 5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3' miRNA: 3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 130411 | 0.7 | 0.510155 |
Target: 5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3' miRNA: 3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 41172 | 0.71 | 0.473344 |
Target: 5'- aGCcccgGCGCGcCGCCCCaaCGUCGCUCg- -3' miRNA: 3'- -CGca--UGUGC-GCGGGGg-GCAGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 117252 | 0.71 | 0.473344 |
Target: 5'- gGCGUACcCGgGCCCgCCGagCGCUC-Cg -3' miRNA: 3'- -CGCAUGuGCgCGGGgGGCa-GCGAGaG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 126862 | 0.71 | 0.473344 |
Target: 5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3' miRNA: 3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 109760 | 0.71 | 0.473344 |
Target: 5'- cGCGUGCACGCGCgcaaCCCCUGaCgGCcccCUCg -3' miRNA: 3'- -CGCAUGUGCGCG----GGGGGCaG-CGa--GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 127569 | 0.7 | 0.482425 |
Target: 5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3' miRNA: 3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 10431 | 0.7 | 0.49067 |
Target: 5'- cGCGUcCAcCGCGUCCucaccuacucgcaCCCGUCGCcgcUCUCg -3' miRNA: 3'- -CGCAuGU-GCGCGGG-------------GGGCAGCG---AGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 117686 | 0.7 | 0.500835 |
Target: 5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3' miRNA: 3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 110514 | 0.7 | 0.500835 |
Target: 5'- gGCGUGCGgGCGCCUgCUGcCGgUCUUc -3' miRNA: 3'- -CGCAUGUgCGCGGGgGGCaGCgAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 55659 | 0.7 | 0.500835 |
Target: 5'- cGCGgcgGCGCGCCCCgccaCGUCggcccaGCUCUCc -3' miRNA: 3'- -CGCaugUGCGCGGGGg---GCAG------CGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 68887 | 0.69 | 0.577144 |
Target: 5'- gGCGccCGCGcCGCCUCCCGcUCGCggUCg -3' miRNA: 3'- -CGCauGUGC-GCGGGGGGC-AGCGagAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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