miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 148306 0.68 0.596692
Target:  5'- gGCGUACGCGCGgagCUCCCGgCGCagaUCg -3'
miRNA:   3'- -CGCAUGUGCGCg--GGGGGCaGCGag-AG- -5'
21658 3' -60.5 NC_004812.1 + 138151 0.68 0.596692
Target:  5'- cGCGggGC-CGCGcCCCCCCGcCGCg--- -3'
miRNA:   3'- -CGCa-UGuGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 11986 0.68 0.604541
Target:  5'- cGCGaugGCGCGCGUCCCgCCGUCaaaaGCgcagacgaccugCUCg -3'
miRNA:   3'- -CGCa--UGUGCGCGGGG-GGCAG----CGa-----------GAG- -5'
21658 3' -60.5 NC_004812.1 + 11199 0.68 0.605523
Target:  5'- cGCGcaaguacUACACGCGCuCCUCCGacggaCGCaUCUCc -3'
miRNA:   3'- -CGC-------AUGUGCGCG-GGGGGCa----GCG-AGAG- -5'
21658 3' -60.5 NC_004812.1 + 35360 0.68 0.606505
Target:  5'- gGUGUccgGgGCGaCGCCCCCCGUgGCaaaggaCUCg -3'
miRNA:   3'- -CGCA---UgUGC-GCGGGGGGCAgCGa-----GAG- -5'
21658 3' -60.5 NC_004812.1 + 120725 0.69 0.567422
Target:  5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3'
miRNA:   3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 85622 0.69 0.567422
Target:  5'- gGCGgccgaccCGCGgGCCCCgCGgUGCUCUCc -3'
miRNA:   3'- -CGCau-----GUGCgCGGGGgGCaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 127569 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 10431 0.7 0.49067
Target:  5'- cGCGUcCAcCGCGUCCucaccuacucgcaCCCGUCGCcgcUCUCg -3'
miRNA:   3'- -CGCAuGU-GCGCGGG-------------GGGCAGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 117686 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 110514 0.7 0.500835
Target:  5'- gGCGUGCGgGCGCCUgCUGcCGgUCUUc -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCaGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 55659 0.7 0.500835
Target:  5'- cGCGgcgGCGCGCCCCgccaCGUCggcccaGCUCUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGg---GCAG------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 130411 0.7 0.510155
Target:  5'- gGCG-GCGCGCGCgCgCCGcCGCUCg- -3'
miRNA:   3'- -CGCaUGUGCGCGgGgGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 151567 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 51148 0.7 0.519547
Target:  5'- cGgGgagGCGCGCGCCCCgCCccgcGUCGUUCcCg -3'
miRNA:   3'- -CgCa--UGUGCGCGGGG-GG----CAGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 146451 0.7 0.529006
Target:  5'- cGCGaACGCcCcCCCCCCGUCGCcgUCUg -3'
miRNA:   3'- -CGCaUGUGcGcGGGGGGCAGCG--AGAg -5'
21658 3' -60.5 NC_004812.1 + 36235 0.69 0.538528
Target:  5'- cGCGU--ACGCGCCCCCgGcCGCg--- -3'
miRNA:   3'- -CGCAugUGCGCGGGGGgCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 117563 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 73796 0.69 0.557741
Target:  5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3'
miRNA:   3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 119027 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.