miRNA display CGI


Results 121 - 140 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 119027 0.69 0.561608
Target:  5'- ---cACACaCGCCCCCUGUcguccaucccaacccCGCUCUCc -3'
miRNA:   3'- cgcaUGUGcGCGGGGGGCA---------------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 73796 0.69 0.557741
Target:  5'- aGCGggGCGgGCGCCggcgCCCCG-CGCUCcCa -3'
miRNA:   3'- -CGCa-UGUgCGCGG----GGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 117563 0.69 0.538528
Target:  5'- gGUGaGCGCGCgggccgaaauggGCCCCCCGagGCUUUUc -3'
miRNA:   3'- -CGCaUGUGCG------------CGGGGGGCagCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 36235 0.69 0.538528
Target:  5'- cGCGU--ACGCGCCCCCgGcCGCg--- -3'
miRNA:   3'- -CGCAugUGCGCGGGGGgCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 146451 0.7 0.529006
Target:  5'- cGCGaACGCcCcCCCCCCGUCGCcgUCUg -3'
miRNA:   3'- -CGCaUGUGcGcGGGGGGCAGCG--AGAg -5'
21658 3' -60.5 NC_004812.1 + 114869 0.74 0.327036
Target:  5'- gGCGcGCACGCGCaCCCCCGUCa----- -3'
miRNA:   3'- -CGCaUGUGCGCG-GGGGGCAGcgagag -5'
21658 3' -60.5 NC_004812.1 + 121981 0.73 0.334227
Target:  5'- gGUGUGCACGUucgacgGCCCCgCCGUCGUgcgaUCg -3'
miRNA:   3'- -CGCAUGUGCG------CGGGG-GGCAGCGag--AG- -5'
21658 3' -60.5 NC_004812.1 + 7047 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 111641 0.73 0.348955
Target:  5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3'
miRNA:   3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 73767 0.73 0.36414
Target:  5'- cGCGcucgGCGCGCGCaCCCCCGgguaCGCUg-- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGCa---GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 125284 0.73 0.371902
Target:  5'- gGCGUACGCgGCgGCCgUCCUGUCGUUcCUCg -3'
miRNA:   3'- -CGCAUGUG-CG-CGG-GGGGCAGCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 148637 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 55697 0.75 0.273648
Target:  5'- gGCGguggGCGCGCGCCUgcaCCCG-CGCUCg- -3'
miRNA:   3'- -CGCa---UGUGCGCGGG---GGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 99027 0.75 0.261442
Target:  5'- gGCGgGCcuCGCGCgCCCCGUCucgGCUCUCu -3'
miRNA:   3'- -CGCaUGu-GCGCGgGGGGCAG---CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 72749 0.76 0.238364
Target:  5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3'
miRNA:   3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 106137 0.76 0.232867
Target:  5'- gGCGUccACACGCGCCCgCCGagGCcgagCUCg -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 52393 0.76 0.227478
Target:  5'- gGCacACACGCuccuuCCCCCCGcUCGCUCUCg -3'
miRNA:   3'- -CGcaUGUGCGc----GGGGGGC-AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 154265 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 17071 0.79 0.162585
Target:  5'- cGCGg--ACGCGCCCCCCGUggCGCUgUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCA--GCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 47697 0.66 0.760995
Target:  5'- cGCGgcCGCGgGCCCCCgGgCGUaCUg -3'
miRNA:   3'- -CGCauGUGCgCGGGGGgCaGCGaGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.