miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 94029 0.71 0.437917
Target:  5'- gGCGUGCccgGCGUGUgCCCCGUgcugCGCgugCUCg -3'
miRNA:   3'- -CGCAUG---UGCGCGgGGGGCA----GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 59287 0.72 0.404059
Target:  5'- cGCGgGCGCGCGgcaCCCgCCCGcCGCgagCUCg -3'
miRNA:   3'- -CGCaUGUGCGC---GGG-GGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 121981 0.73 0.334227
Target:  5'- gGUGUGCACGUucgacgGCCCCgCCGUCGUgcgaUCg -3'
miRNA:   3'- -CGCAUGUGCG------CGGGG-GGCAGCGag--AG- -5'
21658 3' -60.5 NC_004812.1 + 52393 0.76 0.227478
Target:  5'- gGCacACACGCuccuuCCCCCCGcUCGCUCUCg -3'
miRNA:   3'- -CGcaUGUGCGc----GGGGGGC-AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 103594 0.71 0.473344
Target:  5'- cGCGUGCcCGCGCgCCCCGggacgUGCUa-- -3'
miRNA:   3'- -CGCAUGuGCGCGgGGGGCa----GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 57962 0.71 0.455444
Target:  5'- cGCGUGCGCGCGUCgCgCCCGggCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-G-GGGCa-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 46864 0.72 0.395856
Target:  5'- cGCGUGCACGCGCCaCgUCaGUCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-GgGG-CAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 154265 0.78 0.170716
Target:  5'- gGCGgGgACGCGCCCCCCGUC-CUC-Cg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGGCAGcGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 124862 0.71 0.455444
Target:  5'- gGCGgGCGcCGCGCCCCCgcccCG-CGcCUCUCg -3'
miRNA:   3'- -CGCaUGU-GCGCGGGGG----GCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 17071 0.79 0.162585
Target:  5'- cGCGg--ACGCGCCCCCCGUggCGCUgUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCA--GCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 89956 0.72 0.404059
Target:  5'- aGCGgcgGCGCGCCUCCCGacgCGC-CUCc -3'
miRNA:   3'- -CGCaugUGCGCGGGGGGCa--GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 149818 0.71 0.437917
Target:  5'- -----gGCGCGCCCCCCGagGCacggCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 125284 0.73 0.371902
Target:  5'- gGCGUACGCgGCgGCCgUCCUGUCGUUcCUCg -3'
miRNA:   3'- -CGCAUGUG-CG-CGG-GGGGCAGCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 7047 0.73 0.348955
Target:  5'- cGCGagggGCG-GCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGGCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 55697 0.75 0.273648
Target:  5'- gGCGguggGCGCGCGCCUgcaCCCG-CGCUCg- -3'
miRNA:   3'- -CGCa---UGUGCGCGGG---GGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 106137 0.76 0.232867
Target:  5'- gGCGUccACACGCGCCCgCCGagGCcgagCUCg -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 148587 0.7 0.500835
Target:  5'- gGCGgaggccgGCcCGCGCCCCCCGgggUCGCg--- -3'
miRNA:   3'- -CGCa------UGuGCGCGGGGGGC---AGCGagag -5'
21658 3' -60.5 NC_004812.1 + 2060 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 1354 0.71 0.473344
Target:  5'- gGCGUccGC-CGCGCCCCCCcucggccCGCcCUCg -3'
miRNA:   3'- -CGCA--UGuGCGCGGGGGGca-----GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 7249 0.71 0.464349
Target:  5'- aCGUGaccgGCgGCGUCCCCCGUCGC-CUa -3'
miRNA:   3'- cGCAUg---UG-CGCGGGGGGCAGCGaGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.