miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 2060 0.7 0.482425
Target:  5'- cGCGggggaggGgGCGCGCCCCCCG-CG-UCUa -3'
miRNA:   3'- -CGCa------UgUGCGCGGGGGGCaGCgAGAg -5'
21658 3' -60.5 NC_004812.1 + 54619 0.7 0.510155
Target:  5'- cGCGaguCGCGCGaCCCCCCG-CGCg--- -3'
miRNA:   3'- -CGCau-GUGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 72749 0.76 0.238364
Target:  5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3'
miRNA:   3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 148637 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 111641 0.73 0.348955
Target:  5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3'
miRNA:   3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 126655 0.72 0.378984
Target:  5'- uGCuGUuCGCGCGCCCCgucgacgCCGUCGUgcugCUCg -3'
miRNA:   3'- -CG-CAuGUGCGCGGGG-------GGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 84709 0.72 0.404059
Target:  5'- cGCGgcgcCGCGCcgcccgGCCCgCCGUCGgCUCUCu -3'
miRNA:   3'- -CGCau--GUGCG------CGGGgGGCAGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 149818 0.71 0.437917
Target:  5'- -----gGCGCGCCCCCCGagGCacggCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 57962 0.71 0.455444
Target:  5'- cGCGUGCGCGCGUCgCgCCCGggCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-G-GGGCa-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 142499 0.71 0.464349
Target:  5'- gGCGUucacGCacgGCGCGCUCCCCG-CGUUCa- -3'
miRNA:   3'- -CGCA----UG---UGCGCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 74583 0.68 0.645868
Target:  5'- gGCGcccgACgGCGUcCCCCCCGccgUGCUCUCc -3'
miRNA:   3'- -CGCa---UG-UGCGcGGGGGGCa--GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 92486 0.68 0.644883
Target:  5'- cGCGUcCGCGUccucCCCCCCGUCuGCcgcggcgUCUCc -3'
miRNA:   3'- -CGCAuGUGCGc---GGGGGGCAG-CG-------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 126067 0.7 0.529006
Target:  5'- cGCGgccGCGCGCccugcgccuGCCCCCCGgCGCcuUCUUc -3'
miRNA:   3'- -CGCa--UGUGCG---------CGGGGGGCaGCG--AGAG- -5'
21658 3' -60.5 NC_004812.1 + 137457 0.69 0.548108
Target:  5'- gGCGccgccGC-CGCGCCCCCCGcggCGCUg-- -3'
miRNA:   3'- -CGCa----UGuGCGCGGGGGGCa--GCGAgag -5'
21658 3' -60.5 NC_004812.1 + 151626 0.69 0.567422
Target:  5'- uGCGgcGCACG-GCCCCCCGgcgCGCa--- -3'
miRNA:   3'- -CGCa-UGUGCgCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 15124 0.69 0.577144
Target:  5'- uUGUaGCGCGCGUCCggCCgCGUCGC-CUCg -3'
miRNA:   3'- cGCA-UGUGCGCGGG--GG-GCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 123591 0.69 0.586903
Target:  5'- gGCGgccgagcACACGCGCgCCCgGUCGCcCg- -3'
miRNA:   3'- -CGCa------UGUGCGCGgGGGgCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 81703 0.68 0.596692
Target:  5'- cGCGccUGCACGCGCgCCUgGaCGCgCUCg -3'
miRNA:   3'- -CGC--AUGUGCGCGgGGGgCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 624 0.68 0.616336
Target:  5'- cGCGaGCACGCGggcugcaaCCCCGagGCUCUg -3'
miRNA:   3'- -CGCaUGUGCGCgg------GGGGCagCGAGAg -5'
21658 3' -60.5 NC_004812.1 + 46501 0.68 0.627163
Target:  5'- cGCGUuuucuCcCGCGCCCCCCGggggggcccacggggC-CUCUCc -3'
miRNA:   3'- -CGCAu----GuGCGCGGGGGGCa--------------GcGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.