Results 81 - 100 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 3' | -60.5 | NC_004812.1 | + | 76442 | 0.69 | 0.548108 |
Target: 5'- uCGUGCAUGCGa---UCGUCGCUCUCc -3' miRNA: 3'- cGCAUGUGCGCggggGGCAGCGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 73341 | 0.69 | 0.567422 |
Target: 5'- cGCGUGCggcgaGCgGCGCCCCggCCGaCGC-CUCg -3' miRNA: 3'- -CGCAUG-----UG-CGCGGGG--GGCaGCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 156519 | 0.69 | 0.567422 |
Target: 5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3' miRNA: 3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 34335 | 0.69 | 0.577144 |
Target: 5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3' miRNA: 3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 1798 | 0.68 | 0.596692 |
Target: 5'- cGCGUGCAuCGgGCCCCggCUGcgCGC-CUCg -3' miRNA: 3'- -CGCAUGU-GCgCGGGG--GGCa-GCGaGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 624 | 0.68 | 0.616336 |
Target: 5'- cGCGaGCACGCGggcugcaaCCCCGagGCUCUg -3' miRNA: 3'- -CGCaUGUGCGCgg------GGGGCagCGAGAg -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 46501 | 0.68 | 0.627163 |
Target: 5'- cGCGUuuucuCcCGCGCCCCCCGggggggcccacggggC-CUCUCc -3' miRNA: 3'- -CGCAu----GuGCGCGGGGGGCa--------------GcGAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 142499 | 0.71 | 0.464349 |
Target: 5'- gGCGUucacGCacgGCGCGCUCCCCG-CGUUCa- -3' miRNA: 3'- -CGCA----UG---UGCGCGGGGGGCaGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 57962 | 0.71 | 0.455444 |
Target: 5'- cGCGUGCGCGCGUCgCgCCCGggCGCa--- -3' miRNA: 3'- -CGCAUGUGCGCGG-G-GGGCa-GCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 149818 | 0.71 | 0.437917 |
Target: 5'- -----gGCGCGCCCCCCGagGCacggCUCg -3' miRNA: 3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 27471 | 0.67 | 0.655701 |
Target: 5'- gGCGgcgcCGCGCGCCCgCCGgcgCGCa--- -3' miRNA: 3'- -CGCau--GUGCGCGGGgGGCa--GCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 10986 | 0.67 | 0.665516 |
Target: 5'- cCGUGCugGCGCgCCCCGgCGgaC-Ca -3' miRNA: 3'- cGCAUGugCGCGgGGGGCaGCgaGaG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 83780 | 0.67 | 0.675308 |
Target: 5'- cGCGgccgcuCGCGgggaGCCCCCCGUgccuggUGCUCgUCg -3' miRNA: 3'- -CGCau----GUGCg---CGGGGGGCA------GCGAG-AG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 8704 | 0.67 | 0.685066 |
Target: 5'- gGCGggACGCccuccGCGCCCCCC-UCGCg--- -3' miRNA: 3'- -CGCa-UGUG-----CGCGGGGGGcAGCGagag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 129898 | 0.67 | 0.693813 |
Target: 5'- cCGUGCgACGCGCCUgcguggaUCCGUCGC-Cg- -3' miRNA: 3'- cGCAUG-UGCGCGGG-------GGGCAGCGaGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 72749 | 0.76 | 0.238364 |
Target: 5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3' miRNA: 3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 148637 | 0.74 | 0.312998 |
Target: 5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3' miRNA: 3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 111641 | 0.73 | 0.348955 |
Target: 5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3' miRNA: 3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 126655 | 0.72 | 0.378984 |
Target: 5'- uGCuGUuCGCGCGCCCCgucgacgCCGUCGUgcugCUCg -3' miRNA: 3'- -CG-CAuGUGCGCGGGG-------GGCAGCGa---GAG- -5' |
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21658 | 3' | -60.5 | NC_004812.1 | + | 84709 | 0.72 | 0.404059 |
Target: 5'- cGCGgcgcCGCGCcgcccgGCCCgCCGUCGgCUCUCu -3' miRNA: 3'- -CGCau--GUGCG------CGGGgGGCAGC-GAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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