miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 218 0.67 0.684091
Target:  5'- cGgGU-CGCGCagccccgGCCCCCgCGgcccCGCUCUCc -3'
miRNA:   3'- -CgCAuGUGCG-------CGGGGG-GCa---GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 102956 0.67 0.694783
Target:  5'- uGC-UGCGCGCcgaguacgGCCCCUCGUucCGCUuCUCc -3'
miRNA:   3'- -CGcAUGUGCG--------CGGGGGGCA--GCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 130702 0.67 0.694783
Target:  5'- cGCG-ACGCGCGCCCgCgG-CGCUg-- -3'
miRNA:   3'- -CGCaUGUGCGCGGGgGgCaGCGAgag -5'
21658 3' -60.5 NC_004812.1 + 51641 0.67 0.704453
Target:  5'- cGCGUGCGCGCcgagaGCCccucuCCCCGcCGCg--- -3'
miRNA:   3'- -CGCAUGUGCG-----CGG-----GGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 11466 0.66 0.710228
Target:  5'- aCGUACACGacgcacacguacaGCCCgCCGcUCGC-CUCc -3'
miRNA:   3'- cGCAUGUGCg------------CGGGgGGC-AGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 34335 0.69 0.577144
Target:  5'- gGCGccGC-CGCGCCCCCCGUgGUc--- -3'
miRNA:   3'- -CGCa-UGuGCGCGGGGGGCAgCGagag -5'
21658 3' -60.5 NC_004812.1 + 156519 0.69 0.567422
Target:  5'- ---cGCGCGCGCCCcggCCCGUCcCUCg- -3'
miRNA:   3'- cgcaUGUGCGCGGG---GGGCAGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 72749 0.76 0.238364
Target:  5'- gGCGgcaGCGcCGCCCCCCGcCGCUCc- -3'
miRNA:   3'- -CGCaugUGC-GCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 148637 0.74 0.312998
Target:  5'- gGCGccCGCGCGCUCUCCG-CGuCUCUCg -3'
miRNA:   3'- -CGCauGUGCGCGGGGGGCaGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 111641 0.73 0.348955
Target:  5'- cGCGgGCcuccuGCGCGCCCCCuCGgCGCUCg- -3'
miRNA:   3'- -CGCaUG-----UGCGCGGGGG-GCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 126655 0.72 0.378984
Target:  5'- uGCuGUuCGCGCGCCCCgucgacgCCGUCGUgcugCUCg -3'
miRNA:   3'- -CG-CAuGUGCGCGGGG-------GGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 84709 0.72 0.404059
Target:  5'- cGCGgcgcCGCGCcgcccgGCCCgCCGUCGgCUCUCu -3'
miRNA:   3'- -CGCau--GUGCG------CGGGgGGCAGC-GAGAG- -5'
21658 3' -60.5 NC_004812.1 + 149818 0.71 0.437917
Target:  5'- -----gGCGCGCCCCCCGagGCacggCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGGGCagCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 57962 0.71 0.455444
Target:  5'- cGCGUGCGCGCGUCgCgCCCGggCGCa--- -3'
miRNA:   3'- -CGCAUGUGCGCGG-G-GGGCa-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 142499 0.71 0.464349
Target:  5'- gGCGUucacGCacgGCGCGCUCCCCG-CGUUCa- -3'
miRNA:   3'- -CGCA----UG---UGCGCGGGGGGCaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 86863 0.7 0.49159
Target:  5'- aGCGcACugGUGCCCCCCGgUGC-Cg- -3'
miRNA:   3'- -CGCaUGugCGCGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 47150 0.7 0.500835
Target:  5'- aGCccGCGgGCGCCCCCgCGcCGCcCUCu -3'
miRNA:   3'- -CGcaUGUgCGCGGGGG-GCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 26058 0.7 0.519547
Target:  5'- cGCGgcgcccuCGCGCGCCCCCggcccgggguCGUCgGC-CUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGGG----------GCAG-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 76442 0.69 0.548108
Target:  5'- uCGUGCAUGCGa---UCGUCGCUCUCc -3'
miRNA:   3'- cGCAUGUGCGCggggGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 73341 0.69 0.567422
Target:  5'- cGCGUGCggcgaGCgGCGCCCCggCCGaCGC-CUCg -3'
miRNA:   3'- -CGCAUG-----UG-CGCGGGG--GGCaGCGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.