miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 124250 0.66 0.750861
Target:  5'- gGCGggggGCGCGCGCggcggcgCCCCCGUCuccggagaGCUa-- -3'
miRNA:   3'- -CGCa---UGUGCGCG-------GGGGGCAG--------CGAgag -5'
21658 3' -60.5 NC_004812.1 + 51555 0.66 0.749006
Target:  5'- aGUGUGCGCccgcggccggagcgGCGCCUCCCaUCGCg--- -3'
miRNA:   3'- -CGCAUGUG--------------CGCGGGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 150258 0.66 0.742483
Target:  5'- gGCGggcgGCGCGCcugccGCCCCCUGcUGCccCUCc -3'
miRNA:   3'- -CGCa---UGUGCG-----CGGGGGGCaGCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 104720 0.66 0.742483
Target:  5'- uGCGUGgccgcCACGCGCCCCacggCCG-CGCa--- -3'
miRNA:   3'- -CGCAU-----GUGCGCGGGG----GGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 96541 0.66 0.742483
Target:  5'- cGCGUGCGCucCGCCCUgccgCUGUCGCg--- -3'
miRNA:   3'- -CGCAUGUGc-GCGGGG----GGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 138416 0.66 0.742483
Target:  5'- cGCGUGgACGCggggggcugccgGCgCCCCaUCGCcCUCa -3'
miRNA:   3'- -CGCAUgUGCG------------CGgGGGGcAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 119357 0.66 0.742483
Target:  5'- gGCGggcgGCGCGCcugccGCCCCCUGcUGCccCUCc -3'
miRNA:   3'- -CGCa---UGUGCG-----CGGGGGGCaGCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 23661 0.66 0.742483
Target:  5'- gGCGagggGCG-GCGUCCCCgGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGgCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 80142 0.66 0.742483
Target:  5'- -----gGCGUGCCCCCuggccuuccuCGUCGCcCUCg -3'
miRNA:   3'- cgcaugUGCGCGGGGG----------GCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 149169 0.66 0.742483
Target:  5'- gGCGagggGCG-GCGUCCCCgGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGgCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 131221 0.66 0.733088
Target:  5'- gGCGaGCGCGCcgaccuCCCCCUGUguCUCUCu -3'
miRNA:   3'- -CGCaUGUGCGc-----GGGGGGCAgcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 25577 0.66 0.733088
Target:  5'- cGCGgaagACgaaGCGCCgCCCCGccUCGUccuUCUCg -3'
miRNA:   3'- -CGCa---UGug-CGCGG-GGGGC--AGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 19225 0.66 0.733088
Target:  5'- aGUGgucCACgGCGcCCCCCCGggGCUCg- -3'
miRNA:   3'- -CGCau-GUG-CGC-GGGGGGCagCGAGag -5'
21658 3' -60.5 NC_004812.1 + 53444 0.66 0.733088
Target:  5'- cGCGcugACG-GCGgCCCCCG-CGCUC-Ca -3'
miRNA:   3'- -CGCa--UGUgCGCgGGGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 5713 0.66 0.733088
Target:  5'- gGCGaGCGCGCcgaccuCCCCCUGUguCUCUCu -3'
miRNA:   3'- -CGCaUGUGCGc-----GGGGGGCAgcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 96940 0.66 0.732145
Target:  5'- cGCGgcaACGCgGCGCCCgcgccggCCCGUCcgUCUCa -3'
miRNA:   3'- -CGCa--UGUG-CGCGGG-------GGGCAGcgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 31312 0.66 0.723613
Target:  5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3'
miRNA:   3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 411 0.66 0.723613
Target:  5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3'
miRNA:   3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 126434 0.66 0.723613
Target:  5'- ---cGCGCGCGCCgagCCCGcCGCgcgCUCc -3'
miRNA:   3'- cgcaUGUGCGCGGg--GGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 71976 0.66 0.723613
Target:  5'- cGCGggaggcuCACGCGCCCCggggcuggggcgCgGUCG-UCUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGG------------GgCAGCgAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.