miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 5' -56.4 NC_004812.1 + 122217 0.66 0.883683
Target:  5'- aGAAGGGGcGCGagacGGGAGGGUGUGgGc- -3'
miRNA:   3'- gCUUCUCU-CGC----CUCUCCCACGCgUac -5'
21658 5' -56.4 NC_004812.1 + 117601 0.66 0.883683
Target:  5'- uCGggGuuccGGGCcgggGGAGGGGGggcgGCGCGg- -3'
miRNA:   3'- -GCuuCu---CUCG----CCUCUCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 86378 0.66 0.883683
Target:  5'- -nGGGuGGGCGGaAGAGGGUG-GCGg- -3'
miRNA:   3'- gcUUCuCUCGCC-UCUCCCACgCGUac -5'
21658 5' -56.4 NC_004812.1 + 5860 0.66 0.883683
Target:  5'- gCGggGGGAacaugggcGCGGGccGGGGG-GCGCGg- -3'
miRNA:   3'- -GCuuCUCU--------CGCCU--CUCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 155446 0.66 0.876628
Target:  5'- gCGAcgAGGGAGCGGGGGgccGGGcucGCGCc-- -3'
miRNA:   3'- -GCU--UCUCUCGCCUCU---CCCa--CGCGuac -5'
21658 5' -56.4 NC_004812.1 + 100873 0.66 0.876628
Target:  5'- gGggGAG-GCgGGGGAGGGcGcCGCGg- -3'
miRNA:   3'- gCuuCUCuCG-CCUCUCCCaC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 64244 0.66 0.876628
Target:  5'- uCGGAGcgggcggcGGGGCGGAGAGGcGaUGUGUGUu -3'
miRNA:   3'- -GCUUC--------UCUCGCCUCUCC-C-ACGCGUAc -5'
21658 5' -56.4 NC_004812.1 + 30525 0.66 0.876628
Target:  5'- gCGAAGAaGGCGccGGGGGgcagGCGCAg- -3'
miRNA:   3'- -GCUUCUcUCGCcuCUCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 110648 0.66 0.876628
Target:  5'- gCGGAGAcgcGGGCGGGGAGGG-GuCGgAg- -3'
miRNA:   3'- -GCUUCU---CUCGCCUCUCCCaC-GCgUac -5'
21658 5' -56.4 NC_004812.1 + 134684 0.66 0.873745
Target:  5'- gGAGGGGGGCGGAGccgccgagccgccGGcUGCGCGa- -3'
miRNA:   3'- gCUUCUCUCGCCUCu------------CCcACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 154193 0.67 0.869356
Target:  5'- cCGcAGGGGGGCGGGGGggacGGGUGUagGUGa -3'
miRNA:   3'- -GC-UUCUCUCGCCUCU----CCCACGcgUAC- -5'
21658 5' -56.4 NC_004812.1 + 29225 0.67 0.869356
Target:  5'- --uGGGGGGCGGGcGGGGGU-CGCGg- -3'
miRNA:   3'- gcuUCUCUCGCCU-CUCCCAcGCGUac -5'
21658 5' -56.4 NC_004812.1 + 123292 0.67 0.869356
Target:  5'- cCGcAGGGGGGCGGGGGggacGGGUGUagGUGa -3'
miRNA:   3'- -GC-UUCUCUCGCCUCU----CCCACGcgUAC- -5'
21658 5' -56.4 NC_004812.1 + 154733 0.67 0.869356
Target:  5'- --uGGGGGGCGGGcGGGGGU-CGCGg- -3'
miRNA:   3'- gcuUCUCUCGCCU-CUCCCAcGCGUac -5'
21658 5' -56.4 NC_004812.1 + 16315 0.67 0.861871
Target:  5'- aCGAGcGGGGGCGGAGAccgauGGGUcgggagaaGCGCu-- -3'
miRNA:   3'- -GCUU-CUCUCGCCUCU-----CCCA--------CGCGuac -5'
21658 5' -56.4 NC_004812.1 + 62167 0.67 0.861871
Target:  5'- aCGAGGaAGAGCGGccGGGGGGc-CGCGa- -3'
miRNA:   3'- -GCUUC-UCUCGCC--UCUCCCacGCGUac -5'
21658 5' -56.4 NC_004812.1 + 83545 0.67 0.861871
Target:  5'- gCGAGGAGcGCGGucuccgGGAGGccGUGCGCc-- -3'
miRNA:   3'- -GCUUCUCuCGCC------UCUCC--CACGCGuac -5'
21658 5' -56.4 NC_004812.1 + 4635 0.67 0.854181
Target:  5'- gCGggGGGGcgggacgcccgcGCGGGGAGGGgcuCGCcgGc -3'
miRNA:   3'- -GCuuCUCU------------CGCCUCUCCCac-GCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 35536 0.67 0.854181
Target:  5'- gCGggGGGGcgggacgcccgcGCGGGGAGGGgcuCGCcgGc -3'
miRNA:   3'- -GCuuCUCU------------CGCCUCUCCCac-GCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 64179 0.67 0.854181
Target:  5'- -cGGGAGGGCGGcGGGGGccgGCaCGUGg -3'
miRNA:   3'- gcUUCUCUCGCCuCUCCCa--CGcGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.