miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21660 3' -50.9 NC_004812.1 + 19252 0.66 0.992713
Target:  5'- uCGAUgGCG-CCcAGCAGCUGCcGGGc- -3'
miRNA:   3'- -GCUA-CGUaGGuUUGUCGACGaCCUag -5'
21660 3' -50.9 NC_004812.1 + 126634 0.66 0.992713
Target:  5'- gCGAcgGCAgccUCC-GGCAGCUGCUGu-UCg -3'
miRNA:   3'- -GCUa-CGU---AGGuUUGUCGACGACcuAG- -5'
21660 3' -50.9 NC_004812.1 + 20402 0.66 0.991605
Target:  5'- aCGGUGau----GAC-GCUGCUGGAUCg -3'
miRNA:   3'- -GCUACguagguUUGuCGACGACCUAG- -5'
21660 3' -50.9 NC_004812.1 + 48156 0.66 0.991605
Target:  5'- gCGcgGCG-CCGGGCGGCggccgcggcGCUGGAg- -3'
miRNA:   3'- -GCuaCGUaGGUUUGUCGa--------CGACCUag -5'
21660 3' -50.9 NC_004812.1 + 60133 0.66 0.991605
Target:  5'- gGcgGCGUCCuccGCGGggGCcGGGUCg -3'
miRNA:   3'- gCuaCGUAGGuu-UGUCgaCGaCCUAG- -5'
21660 3' -50.9 NC_004812.1 + 97365 0.66 0.988992
Target:  5'- ---cGCcgCCAAGCAGCUcGCcGcGGUCg -3'
miRNA:   3'- gcuaCGuaGGUUUGUCGA-CGaC-CUAG- -5'
21660 3' -50.9 NC_004812.1 + 49575 0.66 0.988992
Target:  5'- aCGA-GCAgggCCu-GgGGCUGCUGGcgCa -3'
miRNA:   3'- -GCUaCGUa--GGuuUgUCGACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 81742 0.66 0.988992
Target:  5'- -cGUGCAgcucgCgGAGCAGCUGCUcGAUg -3'
miRNA:   3'- gcUACGUa----GgUUUGUCGACGAcCUAg -5'
21660 3' -50.9 NC_004812.1 + 142529 0.66 0.987468
Target:  5'- ---cGguUCCcgaugGGGCGGCUGCUGGGg- -3'
miRNA:   3'- gcuaCguAGG-----UUUGUCGACGACCUag -5'
21660 3' -50.9 NC_004812.1 + 49980 0.66 0.987468
Target:  5'- aGcgGCGacUCCGGugAGCUggcGCUGGAc- -3'
miRNA:   3'- gCuaCGU--AGGUUugUCGA---CGACCUag -5'
21660 3' -50.9 NC_004812.1 + 73003 0.66 0.987468
Target:  5'- gGAUGCGcgcacCCAcuGGCGcccGCUGCUGGAg- -3'
miRNA:   3'- gCUACGUa----GGU--UUGU---CGACGACCUag -5'
21660 3' -50.9 NC_004812.1 + 81880 0.66 0.987468
Target:  5'- ---cGCGcUCCAGACGGCgaccaacacggUGCUGGggCu -3'
miRNA:   3'- gcuaCGU-AGGUUUGUCG-----------ACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 22160 0.66 0.985786
Target:  5'- ---cGCGUCCAcgcGGCagAGCUGCUGcauGGUCg -3'
miRNA:   3'- gcuaCGUAGGU---UUG--UCGACGAC---CUAG- -5'
21660 3' -50.9 NC_004812.1 + 15693 0.66 0.985786
Target:  5'- aCGccGCGUCCGugaAGguGCUGUUGGGc- -3'
miRNA:   3'- -GCuaCGUAGGU---UUguCGACGACCUag -5'
21660 3' -50.9 NC_004812.1 + 61330 0.67 0.983936
Target:  5'- gCGGUGCGUUCGggagGACGGgUGCUGcGGa- -3'
miRNA:   3'- -GCUACGUAGGU----UUGUCgACGAC-CUag -5'
21660 3' -50.9 NC_004812.1 + 66414 0.67 0.98191
Target:  5'- aCGGUGCGcUCCAGgucgaaggGCAGC-GCcacggGGGUCg -3'
miRNA:   3'- -GCUACGU-AGGUU--------UGUCGaCGa----CCUAG- -5'
21660 3' -50.9 NC_004812.1 + 143241 0.67 0.977289
Target:  5'- aGGUGCAcagCAAGCAGCaGCUGGu-- -3'
miRNA:   3'- gCUACGUag-GUUUGUCGaCGACCuag -5'
21660 3' -50.9 NC_004812.1 + 24716 0.67 0.974678
Target:  5'- gCGA-GCGUcucgucgaacgCCAGGCGGCUGUUgcggcGGAUCa -3'
miRNA:   3'- -GCUaCGUA-----------GGUUUGUCGACGA-----CCUAG- -5'
21660 3' -50.9 NC_004812.1 + 110798 0.68 0.96554
Target:  5'- gGAgGCGUUCGcGCuagAGCUGCUGGggCg -3'
miRNA:   3'- gCUaCGUAGGUuUG---UCGACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 88209 0.68 0.96554
Target:  5'- gCGAgccGCGgccCCGGACGGCgGCUGGGc- -3'
miRNA:   3'- -GCUa--CGUa--GGUUUGUCGaCGACCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.