miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21660 3' -50.9 NC_004812.1 + 82484 1.1 0.006331
Target:  5'- gCGAUGCAUCCAAACAGCUGCUGGAUCu -3'
miRNA:   3'- -GCUACGUAGGUUUGUCGACGACCUAG- -5'
21660 3' -50.9 NC_004812.1 + 49455 0.75 0.692124
Target:  5'- cCGGUGCccgCCAGGCGGC-GCUGGuUCg -3'
miRNA:   3'- -GCUACGua-GGUUUGUCGaCGACCuAG- -5'
21660 3' -50.9 NC_004812.1 + 137348 0.72 0.838774
Target:  5'- aCGgcGCucgCCcGGCAGCUGCUGGGc- -3'
miRNA:   3'- -GCuaCGua-GGuUUGUCGACGACCUag -5'
21660 3' -50.9 NC_004812.1 + 21569 0.72 0.85552
Target:  5'- ---cGCAUCCuccGACAGCUGCcggGGGUg -3'
miRNA:   3'- gcuaCGUAGGu--UUGUCGACGa--CCUAg -5'
21660 3' -50.9 NC_004812.1 + 66468 0.72 0.863564
Target:  5'- cCGccGCGUCCAGgacGCGGCUGUUGGc-- -3'
miRNA:   3'- -GCuaCGUAGGUU---UGUCGACGACCuag -5'
21660 3' -50.9 NC_004812.1 + 50848 0.71 0.878956
Target:  5'- ---gGCggUCAGGCGGCUGCUGGcuGUCu -3'
miRNA:   3'- gcuaCGuaGGUUUGUCGACGACC--UAG- -5'
21660 3' -50.9 NC_004812.1 + 49899 0.71 0.893381
Target:  5'- ---cGCcgCCAGcagcacgcGCAGCgacgGCUGGAUCg -3'
miRNA:   3'- gcuaCGuaGGUU--------UGUCGa---CGACCUAG- -5'
21660 3' -50.9 NC_004812.1 + 137611 0.71 0.893381
Target:  5'- cCGcgGCcgCgGGccucCGGCUGCUGGAUCc -3'
miRNA:   3'- -GCuaCGuaGgUUu---GUCGACGACCUAG- -5'
21660 3' -50.9 NC_004812.1 + 80916 0.71 0.900219
Target:  5'- ---cGCAUcaCCGGGgGGCUGCUGGAccUCg -3'
miRNA:   3'- gcuaCGUA--GGUUUgUCGACGACCU--AG- -5'
21660 3' -50.9 NC_004812.1 + 53616 0.71 0.900219
Target:  5'- uCGA-GCAU-CGAGgGGCUGCUGGAg- -3'
miRNA:   3'- -GCUaCGUAgGUUUgUCGACGACCUag -5'
21660 3' -50.9 NC_004812.1 + 69915 0.7 0.919187
Target:  5'- cCGAgcGCAUCCAGGCgcuggGGCUGCgagaGAUCg -3'
miRNA:   3'- -GCUa-CGUAGGUUUG-----UCGACGac--CUAG- -5'
21660 3' -50.9 NC_004812.1 + 3186 0.7 0.919187
Target:  5'- uGgcGCAUCCAGGCGGCgGCgcGGcgCa -3'
miRNA:   3'- gCuaCGUAGGUUUGUCGaCGa-CCuaG- -5'
21660 3' -50.9 NC_004812.1 + 128695 0.7 0.919187
Target:  5'- uGgcGCAUCCAGGCGGCgGCgcGGcgCa -3'
miRNA:   3'- gCuaCGUAGGUUUGUCGaCGa-CCuaG- -5'
21660 3' -50.9 NC_004812.1 + 11680 0.69 0.940813
Target:  5'- gCGAgcgGCAcUCGGGCAGCUGC-GGGUg -3'
miRNA:   3'- -GCUa--CGUaGGUUUGUCGACGaCCUAg -5'
21660 3' -50.9 NC_004812.1 + 109484 0.69 0.940813
Target:  5'- uGcgGCAUCguGcgGCGGCUGCUGcGUCu -3'
miRNA:   3'- gCuaCGUAGguU--UGUCGACGACcUAG- -5'
21660 3' -50.9 NC_004812.1 + 27349 0.69 0.954301
Target:  5'- cCGgcGCcgCCGcGCcGCUGCUGGcgCg -3'
miRNA:   3'- -GCuaCGuaGGUuUGuCGACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 152857 0.69 0.954301
Target:  5'- cCGgcGCcgCCGcGCcGCUGCUGGcgCg -3'
miRNA:   3'- -GCuaCGuaGGUuUGuCGACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 19825 0.68 0.962036
Target:  5'- ---cGCAUCuCGgccAGCAGCUcCUGGAUCu -3'
miRNA:   3'- gcuaCGUAG-GU---UUGUCGAcGACCUAG- -5'
21660 3' -50.9 NC_004812.1 + 110798 0.68 0.96554
Target:  5'- gGAgGCGUUCGcGCuagAGCUGCUGGggCg -3'
miRNA:   3'- gCUaCGUAGGUuUG---UCGACGACCuaG- -5'
21660 3' -50.9 NC_004812.1 + 110363 0.68 0.96554
Target:  5'- gGGUG-AUCCAAcaggcGguGCUGCUGGAc- -3'
miRNA:   3'- gCUACgUAGGUU-----UguCGACGACCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.