Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21660 | 3' | -50.9 | NC_004812.1 | + | 82484 | 1.1 | 0.006331 |
Target: 5'- gCGAUGCAUCCAAACAGCUGCUGGAUCu -3' miRNA: 3'- -GCUACGUAGGUUUGUCGACGACCUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 22160 | 0.66 | 0.985786 |
Target: 5'- ---cGCGUCCAcgcGGCagAGCUGCUGcauGGUCg -3' miRNA: 3'- gcuaCGUAGGU---UUG--UCGACGAC---CUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 15693 | 0.66 | 0.985786 |
Target: 5'- aCGccGCGUCCGugaAGguGCUGUUGGGc- -3' miRNA: 3'- -GCuaCGUAGGU---UUguCGACGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 49980 | 0.66 | 0.987468 |
Target: 5'- aGcgGCGacUCCGGugAGCUggcGCUGGAc- -3' miRNA: 3'- gCuaCGU--AGGUUugUCGA---CGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 142529 | 0.66 | 0.987468 |
Target: 5'- ---cGguUCCcgaugGGGCGGCUGCUGGGg- -3' miRNA: 3'- gcuaCguAGG-----UUUGUCGACGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 97365 | 0.66 | 0.988992 |
Target: 5'- ---cGCcgCCAAGCAGCUcGCcGcGGUCg -3' miRNA: 3'- gcuaCGuaGGUUUGUCGA-CGaC-CUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 49575 | 0.66 | 0.988992 |
Target: 5'- aCGA-GCAgggCCu-GgGGCUGCUGGcgCa -3' miRNA: 3'- -GCUaCGUa--GGuuUgUCGACGACCuaG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 81742 | 0.66 | 0.988992 |
Target: 5'- -cGUGCAgcucgCgGAGCAGCUGCUcGAUg -3' miRNA: 3'- gcUACGUa----GgUUUGUCGACGAcCUAg -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 48156 | 0.66 | 0.991605 |
Target: 5'- gCGcgGCG-CCGGGCGGCggccgcggcGCUGGAg- -3' miRNA: 3'- -GCuaCGUaGGUUUGUCGa--------CGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 61330 | 0.67 | 0.983936 |
Target: 5'- gCGGUGCGUUCGggagGACGGgUGCUGcGGa- -3' miRNA: 3'- -GCUACGUAGGU----UUGUCgACGAC-CUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 66414 | 0.67 | 0.98191 |
Target: 5'- aCGGUGCGcUCCAGgucgaaggGCAGC-GCcacggGGGUCg -3' miRNA: 3'- -GCUACGU-AGGUU--------UGUCGaCGa----CCUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 24716 | 0.67 | 0.974678 |
Target: 5'- gCGA-GCGUcucgucgaacgCCAGGCGGCUGUUgcggcGGAUCa -3' miRNA: 3'- -GCUaCGUA-----------GGUUUGUCGACGA-----CCUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 49455 | 0.75 | 0.692124 |
Target: 5'- cCGGUGCccgCCAGGCGGC-GCUGGuUCg -3' miRNA: 3'- -GCUACGua-GGUUUGUCGaCGACCuAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 137348 | 0.72 | 0.838774 |
Target: 5'- aCGgcGCucgCCcGGCAGCUGCUGGGc- -3' miRNA: 3'- -GCuaCGua-GGuUUGUCGACGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 128695 | 0.7 | 0.919187 |
Target: 5'- uGgcGCAUCCAGGCGGCgGCgcGGcgCa -3' miRNA: 3'- gCuaCGUAGGUUUGUCGaCGa-CCuaG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 69915 | 0.7 | 0.919187 |
Target: 5'- cCGAgcGCAUCCAGGCgcuggGGCUGCgagaGAUCg -3' miRNA: 3'- -GCUa-CGUAGGUUUG-----UCGACGac--CUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 109484 | 0.69 | 0.940813 |
Target: 5'- uGcgGCAUCguGcgGCGGCUGCUGcGUCu -3' miRNA: 3'- gCuaCGUAGguU--UGUCGACGACcUAG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 152857 | 0.69 | 0.954301 |
Target: 5'- cCGgcGCcgCCGcGCcGCUGCUGGcgCg -3' miRNA: 3'- -GCuaCGuaGGUuUGuCGACGACCuaG- -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 110363 | 0.68 | 0.96554 |
Target: 5'- gGGUG-AUCCAAcaggcGguGCUGCUGGAc- -3' miRNA: 3'- gCUACgUAGGUU-----UguCGACGACCUag -5' |
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21660 | 3' | -50.9 | NC_004812.1 | + | 110798 | 0.68 | 0.96554 |
Target: 5'- gGAgGCGUUCGcGCuagAGCUGCUGGggCg -3' miRNA: 3'- gCUaCGUAGGUuUG---UCGACGACCuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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