miRNA display CGI


Results 1 - 20 of 475 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21664 3' -53.5 NC_004812.1 + 13770 0.65 0.978685
Target:  5'- uCgACCGGCACagggugaacgCCACGGCGUUGc- -3'
miRNA:   3'- -GgUGGUUGUGgua-------GGUGCCGUAGCuc -5'
21664 3' -53.5 NC_004812.1 + 108146 0.66 0.976789
Target:  5'- gCgGCCGgcguACACCAUUCGCaGCAugUCGAc -3'
miRNA:   3'- -GgUGGU----UGUGGUAGGUGcCGU--AGCUc -5'
21664 3' -53.5 NC_004812.1 + 91879 0.66 0.976789
Target:  5'- aCgGCCcgggGGCGCgCAUgcCCGCGGCcUCGGGg -3'
miRNA:   3'- -GgUGG----UUGUG-GUA--GGUGCCGuAGCUC- -5'
21664 3' -53.5 NC_004812.1 + 75516 0.66 0.976789
Target:  5'- gCCGCCcGCACCG-CCACGggccccaggcGCGUggcCGAGu -3'
miRNA:   3'- -GGUGGuUGUGGUaGGUGC----------CGUA---GCUC- -5'
21664 3' -53.5 NC_004812.1 + 38941 0.66 0.976789
Target:  5'- gCCGCUgAGCACCAUcuccccguaggCCACGGgcaCGUCGGc -3'
miRNA:   3'- -GGUGG-UUGUGGUA-----------GGUGCC---GUAGCUc -5'
21664 3' -53.5 NC_004812.1 + 114134 0.66 0.976789
Target:  5'- -aACCGgaaACCAga-ACGGCGUCGGGa -3'
miRNA:   3'- ggUGGUug-UGGUaggUGCCGUAGCUC- -5'
21664 3' -53.5 NC_004812.1 + 83384 0.66 0.976789
Target:  5'- gCCGCCcGC-CCGaCCcgcaggGCGGCcgCGAGg -3'
miRNA:   3'- -GGUGGuUGuGGUaGG------UGCCGuaGCUC- -5'
21664 3' -53.5 NC_004812.1 + 38943 0.66 0.976789
Target:  5'- uCCGCCGGCACCc-CC-CGGCGccCGGc -3'
miRNA:   3'- -GGUGGUUGUGGuaGGuGCCGUa-GCUc -5'
21664 3' -53.5 NC_004812.1 + 6215 0.66 0.976789
Target:  5'- cCCGCgGACGCCGccccugccgCCGCGGCcccgCGGc -3'
miRNA:   3'- -GGUGgUUGUGGUa--------GGUGCCGua--GCUc -5'
21664 3' -53.5 NC_004812.1 + 106491 0.66 0.976789
Target:  5'- aC-CCGugGCUggggcgcggGUCCGCGGCG-CGGGg -3'
miRNA:   3'- gGuGGUugUGG---------UAGGUGCCGUaGCUC- -5'
21664 3' -53.5 NC_004812.1 + 11542 0.66 0.976789
Target:  5'- aCCAcCCGAgGCCGgcucuggauUCCaucGCGGCGUCGcuGGg -3'
miRNA:   3'- -GGU-GGUUgUGGU---------AGG---UGCCGUAGC--UC- -5'
21664 3' -53.5 NC_004812.1 + 50100 0.66 0.976789
Target:  5'- gCCGCCGGCGCCccgcgCCGCGGacccgCGc- -3'
miRNA:   3'- -GGUGGUUGUGGua---GGUGCCgua--GCuc -5'
21664 3' -53.5 NC_004812.1 + 71007 0.66 0.976789
Target:  5'- gCCGCCAGgGCCG-CCAgGGgaaaGUCGGc -3'
miRNA:   3'- -GGUGGUUgUGGUaGGUgCCg---UAGCUc -5'
21664 3' -53.5 NC_004812.1 + 8042 0.66 0.976789
Target:  5'- uCCGCCGGCACCc-CC-CGGCGccCGGc -3'
miRNA:   3'- -GGUGGUUGUGGuaGGuGCCGUa-GCUc -5'
21664 3' -53.5 NC_004812.1 + 57602 0.66 0.976789
Target:  5'- cCCGCCGACuACagcguGUCCAgGGUcaguucccgcuuGUCGGGg -3'
miRNA:   3'- -GGUGGUUG-UGg----UAGGUgCCG------------UAGCUC- -5'
21664 3' -53.5 NC_004812.1 + 11580 0.66 0.976789
Target:  5'- cCCGCCuccgcgcuCGCCGgggaCACGGCGggCGGGc -3'
miRNA:   3'- -GGUGGuu------GUGGUag--GUGCCGUa-GCUC- -5'
21664 3' -53.5 NC_004812.1 + 73906 0.66 0.976789
Target:  5'- gCCGCCGagucGCGCCAgCC-CGGCuggCGGu -3'
miRNA:   3'- -GGUGGU----UGUGGUaGGuGCCGua-GCUc -5'
21664 3' -53.5 NC_004812.1 + 114235 0.66 0.976789
Target:  5'- aCGCCGGCGCCggUCG-GGCcgCGAc -3'
miRNA:   3'- gGUGGUUGUGGuaGGUgCCGuaGCUc -5'
21664 3' -53.5 NC_004812.1 + 37116 0.66 0.976789
Target:  5'- cCCGCgGACGCCGccccugccgCCGCGGCcccgCGGc -3'
miRNA:   3'- -GGUGgUUGUGGUa--------GGUGCCGua--GCUc -5'
21664 3' -53.5 NC_004812.1 + 114239 0.66 0.976789
Target:  5'- aCACCGGCgACCucuUCuCGCGGUgcaCGAGg -3'
miRNA:   3'- gGUGGUUG-UGGu--AG-GUGCCGua-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.