miRNA display CGI


Results 1 - 20 of 1282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21664 5' -60.6 NC_004812.1 + 69222 0.66 0.769124
Target:  5'- cGCCCCcacgggGCC-CCCGGggGgGCGAUcacgGCCGAc -3'
miRNA:   3'- -CGGGG------CGGuGGGCU--UgCGUUG----CGGCU- -5'
21664 5' -60.6 NC_004812.1 + 141384 0.66 0.769124
Target:  5'- uCCCCGUCGCCgUGuacuACGCcgUGCUGGa -3'
miRNA:   3'- cGGGGCGGUGG-GCu---UGCGuuGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 69595 0.66 0.769124
Target:  5'- cGCguaCCGCagcaGCCCGAAcuCGCGguaGCCGAu -3'
miRNA:   3'- -CGg--GGCGg---UGGGCUU--GCGUug-CGGCU- -5'
21664 5' -60.6 NC_004812.1 + 50467 0.66 0.769124
Target:  5'- aGCUCgGCCucggCGGGCGCGuguggacgccggGCGCCGAg -3'
miRNA:   3'- -CGGGgCGGugg-GCUUGCGU------------UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 24068 0.66 0.769124
Target:  5'- cGCCCCucgcGUC-CCCGGGgGaaauguGCGCCGAc -3'
miRNA:   3'- -CGGGG----CGGuGGGCUUgCgu----UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 82355 0.66 0.769124
Target:  5'- aGgCCCGCgGCCuCGcagaGACGCGcguGCGCCu- -3'
miRNA:   3'- -CgGGGCGgUGG-GC----UUGCGU---UGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 149577 0.66 0.769124
Target:  5'- cGCCCCucgcGUC-CCCGGGgGaaauguGCGCCGAc -3'
miRNA:   3'- -CGGGG----CGGuGGGCUUgCgu----UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 16361 0.66 0.769124
Target:  5'- cGCagaaCCGCUACCCGGugGgCGAgGCg-- -3'
miRNA:   3'- -CGg---GGCGGUGGGCUugC-GUUgCGgcu -5'
21664 5' -60.6 NC_004812.1 + 142488 0.66 0.769124
Target:  5'- uCCCCGUCgagucGCCCGccACGC-ACGCCc- -3'
miRNA:   3'- cGGGGCGG-----UGGGCu-UGCGuUGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 3402 0.66 0.769124
Target:  5'- -aCUCGCCGCCCGccuccccccGGCGgcccucCGGCGCCGc -3'
miRNA:   3'- cgGGGCGGUGGGC---------UUGC------GUUGCGGCu -5'
21664 5' -60.6 NC_004812.1 + 15312 0.66 0.769124
Target:  5'- uGCCCgugaugcgcagGCCGCgCGAgggggaagugACGCAGCGCCu- -3'
miRNA:   3'- -CGGGg----------CGGUGgGCU----------UGCGUUGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 57673 0.66 0.769124
Target:  5'- gGCCCCggGUCucuUCCGGGCGCcggccgcguGCGCCGc -3'
miRNA:   3'- -CGGGG--CGGu--GGGCUUGCGu--------UGCGGCu -5'
21664 5' -60.6 NC_004812.1 + 100869 0.66 0.769124
Target:  5'- aGCUCgGCgAacagggcguCCCgGAACGCGggguGCGCCGAg -3'
miRNA:   3'- -CGGGgCGgU---------GGG-CUUGCGU----UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 139718 0.66 0.769124
Target:  5'- aGCCCUGgUGgCUGAugGCcucggccACGCCGAc -3'
miRNA:   3'- -CGGGGCgGUgGGCUugCGu------UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 37129 0.66 0.769124
Target:  5'- nCCCUGCCGCCgCGGcccCGCGgccgucucGCGCCc- -3'
miRNA:   3'- cGGGGCGGUGG-GCUu--GCGU--------UGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 6228 0.66 0.769124
Target:  5'- nCCCUGCCGCCgCGGcccCGCGgccgucucGCGCCc- -3'
miRNA:   3'- cGGGGCGGUGG-GCUu--GCGU--------UGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 13955 0.66 0.769124
Target:  5'- aGCCCaCGCagACCaacagGGGCGCAGC-CCGGc -3'
miRNA:   3'- -CGGG-GCGg-UGGg----CUUGCGUUGcGGCU- -5'
21664 5' -60.6 NC_004812.1 + 3957 0.66 0.769124
Target:  5'- --gCCGCCAgCCCGGGCacgGCGGCcaggucgccGCCGAg -3'
miRNA:   3'- cggGGCGGU-GGGCUUG---CGUUG---------CGGCU- -5'
21664 5' -60.6 NC_004812.1 + 121065 0.66 0.769124
Target:  5'- aGCCCCuccCCGCgCGGGCGUccCGCCc- -3'
miRNA:   3'- -CGGGGc--GGUGgGCUUGCGuuGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 34303 0.66 0.769124
Target:  5'- -aCUCGCCGCCCGccuccccccGGCGgcccucCGGCGCCGc -3'
miRNA:   3'- cgGGGCGGUGGGC---------UUGC------GUUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.