miRNA display CGI


Results 21 - 40 of 1282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21664 5' -60.6 NC_004812.1 + 16361 0.66 0.769124
Target:  5'- cGCagaaCCGCUACCCGGugGgCGAgGCg-- -3'
miRNA:   3'- -CGg---GGCGGUGGGCUugC-GUUgCGgcu -5'
21664 5' -60.6 NC_004812.1 + 57673 0.66 0.769124
Target:  5'- gGCCCCggGUCucuUCCGGGCGCcggccgcguGCGCCGc -3'
miRNA:   3'- -CGGGG--CGGu--GGGCUUGCGu--------UGCGGCu -5'
21664 5' -60.6 NC_004812.1 + 91666 0.66 0.769124
Target:  5'- uUCCCGCCGCa-GA---CGACGCCGAu -3'
miRNA:   3'- cGGGGCGGUGggCUugcGUUGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 149577 0.66 0.769124
Target:  5'- cGCCCCucgcGUC-CCCGGGgGaaauguGCGCCGAc -3'
miRNA:   3'- -CGGGG----CGGuGGGCUUgCgu----UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 83926 0.66 0.769124
Target:  5'- uGUCCC-CCGgCgCGGACGUucuCGCCGGg -3'
miRNA:   3'- -CGGGGcGGUgG-GCUUGCGuu-GCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 61172 0.66 0.769124
Target:  5'- gGCCCgaacccgcggcgCGCCACCCG-GC-CAugGCgGGg -3'
miRNA:   3'- -CGGG------------GCGGUGGGCuUGcGUugCGgCU- -5'
21664 5' -60.6 NC_004812.1 + 82355 0.66 0.769124
Target:  5'- aGgCCCGCgGCCuCGcagaGACGCGcguGCGCCu- -3'
miRNA:   3'- -CgGGGCGgUGG-GC----UUGCGU---UGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 34303 0.66 0.769124
Target:  5'- -aCUCGCCGCCCGccuccccccGGCGgcccucCGGCGCCGc -3'
miRNA:   3'- cgGGGCGGUGGGC---------UUGC------GUUGCGGCu -5'
21664 5' -60.6 NC_004812.1 + 86585 0.66 0.76822
Target:  5'- cCCCCGCCuguCCgCGGAugaaguugcgggcCGCGGCGCgGu -3'
miRNA:   3'- cGGGGCGGu--GG-GCUU-------------GCGUUGCGgCu -5'
21664 5' -60.6 NC_004812.1 + 75508 0.66 0.767316
Target:  5'- cGCCCC-CCagcGCCCGGugcacguccgccCGCAgcGCGUCGAg -3'
miRNA:   3'- -CGGGGcGG---UGGGCUu-----------GCGU--UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 18524 0.66 0.766411
Target:  5'- aUCCCGCCagggcuucgcucgcGCUCGcggccAGCGCGGCGCgGGc -3'
miRNA:   3'- cGGGGCGG--------------UGGGC-----UUGCGUUGCGgCU- -5'
21664 5' -60.6 NC_004812.1 + 14173 0.66 0.763687
Target:  5'- aCCCCGCgCGCggCCGAcGCGCGgacaacugcgucgccGCGCCa- -3'
miRNA:   3'- cGGGGCG-GUG--GGCU-UGCGU---------------UGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 30905 0.66 0.763687
Target:  5'- cGCCCCGCgggCACCUcccggcagaaucgcuGAagaucGCGCGGC-CCGAg -3'
miRNA:   3'- -CGGGGCG---GUGGG---------------CU-----UGCGUUGcGGCU- -5'
21664 5' -60.6 NC_004812.1 + 34568 0.66 0.762777
Target:  5'- aGUCCCGCCcggcgcccaagucccGCCCG-GCGCccaagucccgcccGGCGCCc- -3'
miRNA:   3'- -CGGGGCGG---------------UGGGCuUGCG-------------UUGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 3667 0.66 0.762777
Target:  5'- aGUCCCGCCcggcgcccaagucccGCCCG-GCGCccaagucccgcccGGCGCCc- -3'
miRNA:   3'- -CGGGGCGG---------------UGGGCuUGCG-------------UUGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 102180 0.66 0.760042
Target:  5'- -gCCCGCCGCC--GAC-CGGCGCCa- -3'
miRNA:   3'- cgGGGCGGUGGgcUUGcGUUGCGGcu -5'
21664 5' -60.6 NC_004812.1 + 29890 0.66 0.760042
Target:  5'- cCCCCGaCCACCUcgugcagguGGGcCGCGAUGCgCGGc -3'
miRNA:   3'- cGGGGC-GGUGGG---------CUU-GCGUUGCG-GCU- -5'
21664 5' -60.6 NC_004812.1 + 52058 0.66 0.760042
Target:  5'- cGCCCgagGUCGCCCaGGAUGCcGACGuuGGc -3'
miRNA:   3'- -CGGGg--CGGUGGG-CUUGCG-UUGCggCU- -5'
21664 5' -60.6 NC_004812.1 + 29992 0.66 0.760042
Target:  5'- uGCCgUCGCC-CUCGAugGCcaggacGCGCUGGg -3'
miRNA:   3'- -CGG-GGCGGuGGGCUugCGu-----UGCGGCU- -5'
21664 5' -60.6 NC_004812.1 + 117534 0.66 0.760042
Target:  5'- cGUgCCGCgGCUC--ACGC-ACGCCGAc -3'
miRNA:   3'- -CGgGGCGgUGGGcuUGCGuUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.