miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21665 3' -65.1 NC_004812.1 + 113852 0.66 0.495056
Target:  5'- cGUgCCCGGcGCCUGCaUGgcgGGCCUCAUc -3'
miRNA:   3'- uCG-GGGUC-CGGGCGaACa--CCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 7659 0.66 0.495056
Target:  5'- aAGCUgCGGGCCCGCg---GGCCgggaGCg -3'
miRNA:   3'- -UCGGgGUCCGGGCGaacaCCGGgg--UG- -5'
21665 3' -65.1 NC_004812.1 + 83370 0.66 0.495056
Target:  5'- cGGCCCCAGGgCgGCggcgGUccgcaGGCCggCCGCc -3'
miRNA:   3'- -UCGGGGUCCgGgCGaa--CA-----CCGG--GGUG- -5'
21665 3' -65.1 NC_004812.1 + 112252 0.66 0.495056
Target:  5'- cGCCCCGGGCaCGCccuuuGCCCgCGCg -3'
miRNA:   3'- uCGGGGUCCGgGCGaacacCGGG-GUG- -5'
21665 3' -65.1 NC_004812.1 + 69553 0.66 0.495056
Target:  5'- cGCCCCu-GCCCGCggcgccGGCCgCGCc -3'
miRNA:   3'- uCGGGGucCGGGCGaaca--CCGGgGUG- -5'
21665 3' -65.1 NC_004812.1 + 100173 0.66 0.495056
Target:  5'- cGCCgCCAGGCCCGCc----GCCcgCCGCc -3'
miRNA:   3'- uCGG-GGUCCGGGCGaacacCGG--GGUG- -5'
21665 3' -65.1 NC_004812.1 + 97102 0.66 0.495056
Target:  5'- cGCCCCcuGUCCGCcgGgGGCCgCGCc -3'
miRNA:   3'- uCGGGGucCGGGCGaaCaCCGGgGUG- -5'
21665 3' -65.1 NC_004812.1 + 38560 0.66 0.495056
Target:  5'- aAGCUgCGGGCCCGCg---GGCCgggaGCg -3'
miRNA:   3'- -UCGGgGUCCGGGCGaacaCCGGgg--UG- -5'
21665 3' -65.1 NC_004812.1 + 21379 0.66 0.495056
Target:  5'- -uCCCCccGCCCGCcc--GGCCCCAa -3'
miRNA:   3'- ucGGGGucCGGGCGaacaCCGGGGUg -5'
21665 3' -65.1 NC_004812.1 + 55570 0.66 0.495056
Target:  5'- gGGCCCUgcuGGCCCGC--GUGcaCCCCGa -3'
miRNA:   3'- -UCGGGGu--CCGGGCGaaCACc-GGGGUg -5'
21665 3' -65.1 NC_004812.1 + 99684 0.66 0.495056
Target:  5'- cGCCcuCCAGGUCCGCgccgUGcggcGGCgCCUGCg -3'
miRNA:   3'- uCGG--GGUCCGGGCGa---ACa---CCG-GGGUG- -5'
21665 3' -65.1 NC_004812.1 + 119032 0.66 0.495056
Target:  5'- cGGCCaCC-GGCCCGUcuacgUGgcgGGCUgCCACa -3'
miRNA:   3'- -UCGG-GGuCCGGGCGa----ACa--CCGG-GGUG- -5'
21665 3' -65.1 NC_004812.1 + 116691 0.66 0.495056
Target:  5'- cGCCCCA--CCCGCcucucUUGUcGCCCCAg -3'
miRNA:   3'- uCGGGGUccGGGCG-----AACAcCGGGGUg -5'
21665 3' -65.1 NC_004812.1 + 129297 0.66 0.495056
Target:  5'- cGGCCauCgGGGCCCGCUUcaccgagaUGGCCCgGg -3'
miRNA:   3'- -UCGG--GgUCCGGGCGAAc-------ACCGGGgUg -5'
21665 3' -65.1 NC_004812.1 + 987 0.66 0.495056
Target:  5'- cGCCCCcgaucucacuAGGCCUGCccGgccggGGCCgCGCc -3'
miRNA:   3'- uCGGGG----------UCCGGGCGaaCa----CCGGgGUG- -5'
21665 3' -65.1 NC_004812.1 + 145802 0.66 0.492312
Target:  5'- cGCCUCGGGCUCGg-UGUgGGCggcggggucggcggCCCACg -3'
miRNA:   3'- uCGGGGUCCGGGCgaACA-CCG--------------GGGUG- -5'
21665 3' -65.1 NC_004812.1 + 126487 0.66 0.485935
Target:  5'- -aCCCCgGGGgCUGCgggacGUGcGCCCCGCa -3'
miRNA:   3'- ucGGGG-UCCgGGCGaa---CAC-CGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 28398 0.66 0.485935
Target:  5'- uGGCCUCcGGCCgCGuCUUcgGGCCCgGCg -3'
miRNA:   3'- -UCGGGGuCCGG-GC-GAAcaCCGGGgUG- -5'
21665 3' -65.1 NC_004812.1 + 58171 0.66 0.485935
Target:  5'- cGCCCCcGcGCCUGCc----GCCCCGCg -3'
miRNA:   3'- uCGGGGuC-CGGGCGaacacCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 153906 0.66 0.485935
Target:  5'- uGGCCUCcGGCCgCGuCUUcgGGCCCgGCg -3'
miRNA:   3'- -UCGGGGuCCGG-GC-GAAcaCCGGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.