miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21665 3' -65.1 NC_004812.1 + 86059 1.07 0.000513
Target:  5'- cAGCCCCAGGCCCGCUUGUGGCCCCACc -3'
miRNA:   3'- -UCGGGGUCCGGGCGAACACCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 18369 0.84 0.026437
Target:  5'- cGGCgCCGGGCCCGCg---GGCCCCACa -3'
miRNA:   3'- -UCGgGGUCCGGGCGaacaCCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 153112 0.8 0.053389
Target:  5'- cGGCCCCGGGCCCGCgcccGcGGCCCgcCGCg -3'
miRNA:   3'- -UCGGGGUCCGGGCGaa--CaCCGGG--GUG- -5'
21665 3' -65.1 NC_004812.1 + 27604 0.8 0.053389
Target:  5'- cGGCCCCGGGCCCGCgcccGcGGCCCgcCGCg -3'
miRNA:   3'- -UCGGGGUCCGGGCGaa--CaCCGGG--GUG- -5'
21665 3' -65.1 NC_004812.1 + 82516 0.8 0.057685
Target:  5'- gAGCCCgGGGCCCGCga--GGCCCCGg -3'
miRNA:   3'- -UCGGGgUCCGGGCGaacaCCGGGGUg -5'
21665 3' -65.1 NC_004812.1 + 51404 0.79 0.062315
Target:  5'- gAGCCCgGGGCCCGCgcccGcGCCCCGCg -3'
miRNA:   3'- -UCGGGgUCCGGGCGaacaC-CGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 49402 0.78 0.07084
Target:  5'- cGCCCaggcGGCCCGCgccGUGGCCCCGg -3'
miRNA:   3'- uCGGGgu--CCGGGCGaa-CACCGGGGUg -5'
21665 3' -65.1 NC_004812.1 + 125817 0.78 0.074555
Target:  5'- gGGCCCUcGGCCCGC----GGCCCCGCa -3'
miRNA:   3'- -UCGGGGuCCGGGCGaacaCCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 76693 0.77 0.085542
Target:  5'- cGCCCCGGGCCUGCUggagacgcaauGCCCCGCc -3'
miRNA:   3'- uCGGGGUCCGGGCGAacac-------CGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 3798 0.77 0.086854
Target:  5'- aGGCCCgaccuCAGGCCCGCgcccggccUGcGGCCCCGCc -3'
miRNA:   3'- -UCGGG-----GUCCGGGCGa-------ACaCCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 34699 0.77 0.086854
Target:  5'- aGGCCCgaccuCAGGCCCGCgcccggccUGcGGCCCCGCc -3'
miRNA:   3'- -UCGGG-----GUCCGGGCGa-------ACaCCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 103189 0.77 0.089084
Target:  5'- cGGCCCCGGGCUC-CUcgGUGGCCgCGCu -3'
miRNA:   3'- -UCGGGGUCCGGGcGAa-CACCGGgGUG- -5'
21665 3' -65.1 NC_004812.1 + 53433 0.76 0.106277
Target:  5'- gAGCCCgGGGCCgCGCUgacgGcGGCcCCCGCg -3'
miRNA:   3'- -UCGGGgUCCGG-GCGAa---CaCCG-GGGUG- -5'
21665 3' -65.1 NC_004812.1 + 107040 0.76 0.114563
Target:  5'- cAGCCCCAGGCCCuGCUcguacUGgaUGGCCagCGCg -3'
miRNA:   3'- -UCGGGGUCCGGG-CGA-----AC--ACCGGg-GUG- -5'
21665 3' -65.1 NC_004812.1 + 125736 0.75 0.123449
Target:  5'- cAGCCCCGGcCCCGC----GGCCCCGCu -3'
miRNA:   3'- -UCGGGGUCcGGGCGaacaCCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 92267 0.75 0.132971
Target:  5'- cGGCUCCAGGCCCGCcac-GGCgUCCGCg -3'
miRNA:   3'- -UCGGGGUCCGGGCGaacaCCG-GGGUG- -5'
21665 3' -65.1 NC_004812.1 + 30784 0.74 0.146721
Target:  5'- cGGCCCCgccugcGGGgCCGCggGccgagGGCCCCACg -3'
miRNA:   3'- -UCGGGG------UCCgGGCGaaCa----CCGGGGUG- -5'
21665 3' -65.1 NC_004812.1 + 41929 0.74 0.148165
Target:  5'- cGGCCCCGggcgcgcccggcaccGGCCCGCUcuUGaUGGUgCCCGCg -3'
miRNA:   3'- -UCGGGGU---------------CCGGGCGA--AC-ACCG-GGGUG- -5'
21665 3' -65.1 NC_004812.1 + 77355 0.74 0.150356
Target:  5'- gAGCCCCuGGCCCGCggcGUcGCCCaGCg -3'
miRNA:   3'- -UCGGGGuCCGGGCGaa-CAcCGGGgUG- -5'
21665 3' -65.1 NC_004812.1 + 9756 0.74 0.150356
Target:  5'- cGCCaCCAGGCCCGCggcgcgccgGcGGCCgCGCg -3'
miRNA:   3'- uCGG-GGUCCGGGCGaa-------CaCCGGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.