miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21665 5' -49.5 NC_004812.1 + 84134 0.66 0.998505
Target:  5'- ------cGAGGCGCcgccGCCCccCUCCCa -3'
miRNA:   3'- gauauuuCUUCGCG----UGGGuuGAGGGg -5'
21665 5' -49.5 NC_004812.1 + 90208 0.66 0.998505
Target:  5'- ------uGGAGCGCACCguggccgaCAACUgCCUCa -3'
miRNA:   3'- gauauuuCUUCGCGUGG--------GUUGA-GGGG- -5'
21665 5' -49.5 NC_004812.1 + 69424 0.66 0.998505
Target:  5'- -aAUGcGGAGGUGgA-CCAGCaUCCCCa -3'
miRNA:   3'- gaUAUuUCUUCGCgUgGGUUG-AGGGG- -5'
21665 5' -49.5 NC_004812.1 + 55010 0.66 0.998505
Target:  5'- ---cGGGGcGGCGCAgCUCGACUUCuCCg -3'
miRNA:   3'- gauaUUUCuUCGCGU-GGGUUGAGG-GG- -5'
21665 5' -49.5 NC_004812.1 + 69660 0.66 0.998505
Target:  5'- ---cGAAGGucugcgguuuGGCGCGCC--GCUCCUCu -3'
miRNA:   3'- gauaUUUCU----------UCGCGUGGguUGAGGGG- -5'
21665 5' -49.5 NC_004812.1 + 534 0.66 0.998505
Target:  5'- ---------cGCGCGCCCGGgccCUCCCg -3'
miRNA:   3'- gauauuucuuCGCGUGGGUU---GAGGGg -5'
21665 5' -49.5 NC_004812.1 + 147671 0.66 0.998505
Target:  5'- ---gAGGGGAGCGCgucuGCCCGGaaaCCUCa -3'
miRNA:   3'- gauaUUUCUUCGCG----UGGGUUga-GGGG- -5'
21665 5' -49.5 NC_004812.1 + 88710 0.66 0.998505
Target:  5'- ---cGGAGggG-GCACCCucgugGGCUCCUUc -3'
miRNA:   3'- gauaUUUCuuCgCGUGGG-----UUGAGGGG- -5'
21665 5' -49.5 NC_004812.1 + 31435 0.66 0.998505
Target:  5'- ---------cGCGCGCCCGGgccCUCCCg -3'
miRNA:   3'- gauauuucuuCGCGUGGGUU---GAGGGg -5'
21665 5' -49.5 NC_004812.1 + 96822 0.66 0.998198
Target:  5'- -cGUAGAGGgugagGGCGcCGCCCccACcggCCCCa -3'
miRNA:   3'- gaUAUUUCU-----UCGC-GUGGGu-UGa--GGGG- -5'
21665 5' -49.5 NC_004812.1 + 14215 0.66 0.998198
Target:  5'- ---cAGGGccGgGCGCCCuuuaUCCCCg -3'
miRNA:   3'- gauaUUUCuuCgCGUGGGuug-AGGGG- -5'
21665 5' -49.5 NC_004812.1 + 139128 0.66 0.998198
Target:  5'- -----cGGGAGCGcCACCgCGGCaUCCgCCg -3'
miRNA:   3'- gauauuUCUUCGC-GUGG-GUUG-AGG-GG- -5'
21665 5' -49.5 NC_004812.1 + 143281 0.66 0.998198
Target:  5'- ---gAAGGGAccGcCGCACCCccGAC-CCCCg -3'
miRNA:   3'- gauaUUUCUU--C-GCGUGGG--UUGaGGGG- -5'
21665 5' -49.5 NC_004812.1 + 62339 0.66 0.998198
Target:  5'- ---------cGCGCGCUCGACgaggacgCCCCg -3'
miRNA:   3'- gauauuucuuCGCGUGGGUUGa------GGGG- -5'
21665 5' -49.5 NC_004812.1 + 130564 0.66 0.998198
Target:  5'- ---cGAGGgcGcCGCGCCCccggCCCCg -3'
miRNA:   3'- gauaUUUCuuC-GCGUGGGuugaGGGG- -5'
21665 5' -49.5 NC_004812.1 + 5055 0.66 0.998198
Target:  5'- ---cGAGGgcGcCGCGCCCccggCCCCg -3'
miRNA:   3'- gauaUUUCuuC-GCGUGGGuugaGGGG- -5'
21665 5' -49.5 NC_004812.1 + 81916 0.66 0.998198
Target:  5'- -cGUGgcGGAcGCGCACUacccgCGGCUCCCg -3'
miRNA:   3'- gaUAUuuCUU-CGCGUGG-----GUUGAGGGg -5'
21665 5' -49.5 NC_004812.1 + 132767 0.66 0.998198
Target:  5'- gCUcgAGGGcGGCGCcggGCCgGGCcggCCCCg -3'
miRNA:   3'- -GAuaUUUCuUCGCG---UGGgUUGa--GGGG- -5'
21665 5' -49.5 NC_004812.1 + 96462 0.66 0.998198
Target:  5'- gCUGcu-GGggGCcgACCCGGC-CCCCg -3'
miRNA:   3'- -GAUauuUCuuCGcgUGGGUUGaGGGG- -5'
21665 5' -49.5 NC_004812.1 + 56318 0.66 0.998198
Target:  5'- --cUGGAGGgcGGCGCguccguGCUCGGC-CCCCg -3'
miRNA:   3'- gauAUUUCU--UCGCG------UGGGUUGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.