miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21676 3' -55.8 NC_004812.1 + 18270 0.66 0.922612
Target:  5'- gGCGUCGugcgcgauccgcaggGCCuCCUCCGCgccggcgccaCCCUccGAGCc -3'
miRNA:   3'- -UGUAGU---------------UGGuGGAGGCGa---------GGGA--CUCG- -5'
21676 3' -55.8 NC_004812.1 + 23388 0.66 0.922612
Target:  5'- cCGUCGccacgaucGCCGCCcucaacuucccgcugUCCGC-CCCUG-GCg -3'
miRNA:   3'- uGUAGU--------UGGUGG---------------AGGCGaGGGACuCG- -5'
21676 3' -55.8 NC_004812.1 + 119357 0.66 0.920384
Target:  5'- gGCGggCGGCgCGCCUgCCGCcCCCUGcuGCc -3'
miRNA:   3'- -UGUa-GUUG-GUGGA-GGCGaGGGACu-CG- -5'
21676 3' -55.8 NC_004812.1 + 150258 0.66 0.920384
Target:  5'- gGCGggCGGCgCGCCUgCCGCcCCCUGcuGCc -3'
miRNA:   3'- -UGUa-GUUG-GUGGA-GGCGaGGGACu-CG- -5'
21676 3' -55.8 NC_004812.1 + 51754 0.66 0.920384
Target:  5'- cGCcgCGGCCGCCggCGCggCCaaGAGCc -3'
miRNA:   3'- -UGuaGUUGGUGGagGCGa-GGgaCUCG- -5'
21676 3' -55.8 NC_004812.1 + 16981 0.66 0.920384
Target:  5'- --cUCGGCCccGCCccCCGCUCCg-GGGCg -3'
miRNA:   3'- uguAGUUGG--UGGa-GGCGAGGgaCUCG- -5'
21676 3' -55.8 NC_004812.1 + 58062 0.66 0.920384
Target:  5'- cGCGUgGACUcCCUCgGCgCCCUGcgacGGCu -3'
miRNA:   3'- -UGUAgUUGGuGGAGgCGaGGGAC----UCG- -5'
21676 3' -55.8 NC_004812.1 + 15080 0.66 0.920384
Target:  5'- cACGUC-GCCGCCcgCCGgCUCgagCCcGAGCg -3'
miRNA:   3'- -UGUAGuUGGUGGa-GGC-GAG---GGaCUCG- -5'
21676 3' -55.8 NC_004812.1 + 89777 0.66 0.920384
Target:  5'- -gGUCugcACCGCgCUCCGggCCCUGAucuacGCg -3'
miRNA:   3'- ugUAGu--UGGUG-GAGGCgaGGGACU-----CG- -5'
21676 3' -55.8 NC_004812.1 + 121546 0.66 0.916969
Target:  5'- uCGUCGcgcggcugguggcgcGCgGCaUCCGCUCCCUGAa- -3'
miRNA:   3'- uGUAGU---------------UGgUGgAGGCGAGGGACUcg -5'
21676 3' -55.8 NC_004812.1 + 50058 0.66 0.914645
Target:  5'- aACGUgGACCACCgcgcCCGCUgCgaggugGGGCg -3'
miRNA:   3'- -UGUAgUUGGUGGa---GGCGAgGga----CUCG- -5'
21676 3' -55.8 NC_004812.1 + 151603 0.66 0.914645
Target:  5'- cCAcCuGCCGCCcCCGCccgCCCUGcGGCg -3'
miRNA:   3'- uGUaGuUGGUGGaGGCGa--GGGAC-UCG- -5'
21676 3' -55.8 NC_004812.1 + 120702 0.66 0.914645
Target:  5'- cCAcCuGCCGCCcCCGCccgCCCUGcGGCg -3'
miRNA:   3'- uGUaGuUGGUGGaGGCGa--GGGAC-UCG- -5'
21676 3' -55.8 NC_004812.1 + 12956 0.66 0.914645
Target:  5'- aGCGUCuugaagucgAACgGCgCUCCGCgCCCgGGGCc -3'
miRNA:   3'- -UGUAG---------UUGgUG-GAGGCGaGGGaCUCG- -5'
21676 3' -55.8 NC_004812.1 + 88519 0.66 0.914645
Target:  5'- gGC-UCGACCugGCCUCCGaggagUUCCggGAGCu -3'
miRNA:   3'- -UGuAGUUGG--UGGAGGCg----AGGGa-CUCG- -5'
21676 3' -55.8 NC_004812.1 + 109708 0.66 0.914645
Target:  5'- gGCggCGGCCGCCgcgcCCGaC-CCCgGGGCg -3'
miRNA:   3'- -UGuaGUUGGUGGa---GGC-GaGGGaCUCG- -5'
21676 3' -55.8 NC_004812.1 + 57818 0.66 0.914645
Target:  5'- uCGUgGGCCACCUCCaGCgccgCCUcGGCg -3'
miRNA:   3'- uGUAgUUGGUGGAGG-CGag--GGAcUCG- -5'
21676 3' -55.8 NC_004812.1 + 89972 0.66 0.911087
Target:  5'- ---cCGACgCGCCUcCCGCUUcgcccgugccgacggCCUGGGCg -3'
miRNA:   3'- uguaGUUG-GUGGA-GGCGAG---------------GGACUCG- -5'
21676 3' -55.8 NC_004812.1 + 92401 0.66 0.908667
Target:  5'- -gGUCGAgCACCUUgGCgCCCUG-GUa -3'
miRNA:   3'- ugUAGUUgGUGGAGgCGaGGGACuCG- -5'
21676 3' -55.8 NC_004812.1 + 25749 0.66 0.908667
Target:  5'- uCAUCGacGCCGCCgcgcccCCGCcgaCCCcGGGCg -3'
miRNA:   3'- uGUAGU--UGGUGGa-----GGCGa--GGGaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.