Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21676 | 5' | -55 | NC_004812.1 | + | 99924 | 0.65 | 0.936539 |
Target: 5'- cGGCUGGAGAcguacgggggguGCGucgacauggAGCU-GUGUUuucUGCa -3' miRNA: 3'- aCCGACCUCU------------CGC---------UCGAcCACAA---ACG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 98844 | 0.65 | 0.936539 |
Target: 5'- cGGCgcGGAcGGCGGGgaGGUGUUc-- -3' miRNA: 3'- aCCGa-CCUcUCGCUCgaCCACAAacg -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 145282 | 0.65 | 0.936539 |
Target: 5'- gGGCaucgGGGGGGUGuGC-GGUGUggcggGCc -3' miRNA: 3'- aCCGa---CCUCUCGCuCGaCCACAaa---CG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 127477 | 0.65 | 0.936539 |
Target: 5'- gGGCgccggggGGAGGGgGGGaggGGUGg--GCg -3' miRNA: 3'- aCCGa------CCUCUCgCUCga-CCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 79148 | 0.65 | 0.936539 |
Target: 5'- aGGCUGGcGcGCuuGGGgUGGUGUcgGCc -3' miRNA: 3'- aCCGACCuCuCG--CUCgACCACAaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 70333 | 0.65 | 0.936539 |
Target: 5'- gGGCaGGGGucGGCGAGUcGG-GggUGCu -3' miRNA: 3'- aCCGaCCUC--UCGCUCGaCCaCaaACG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148721 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148540 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148514 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148488 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148618 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 23057 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 23005 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 23031 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 23083 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148670 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148644 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148825 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148747 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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21676 | 5' | -55 | NC_004812.1 | + | 148799 | 0.66 | 0.931472 |
Target: 5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3' miRNA: 3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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