miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21676 5' -55 NC_004812.1 + 99924 0.65 0.936539
Target:  5'- cGGCUGGAGAcguacgggggguGCGucgacauggAGCU-GUGUUuucUGCa -3'
miRNA:   3'- aCCGACCUCU------------CGC---------UCGAcCACAA---ACG- -5'
21676 5' -55 NC_004812.1 + 145282 0.65 0.936539
Target:  5'- gGGCaucgGGGGGGUGuGC-GGUGUggcggGCc -3'
miRNA:   3'- aCCGa---CCUCUCGCuCGaCCACAaa---CG- -5'
21676 5' -55 NC_004812.1 + 98844 0.65 0.936539
Target:  5'- cGGCgcGGAcGGCGGGgaGGUGUUc-- -3'
miRNA:   3'- aCCGa-CCUcUCGCUCgaCCACAAacg -5'
21676 5' -55 NC_004812.1 + 70333 0.65 0.936539
Target:  5'- gGGCaGGGGucGGCGAGUcGG-GggUGCu -3'
miRNA:   3'- aCCGaCCUC--UCGCUCGaCCaCaaACG- -5'
21676 5' -55 NC_004812.1 + 127477 0.65 0.936539
Target:  5'- gGGCgccggggGGAGGGgGGGaggGGUGg--GCg -3'
miRNA:   3'- aCCGa------CCUCUCgCUCga-CCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 79148 0.65 0.936539
Target:  5'- aGGCUGGcGcGCuuGGGgUGGUGUcgGCc -3'
miRNA:   3'- aCCGACCuCuCG--CUCgACCACAaaCG- -5'
21676 5' -55 NC_004812.1 + 148592 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 148514 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 148747 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 43040 0.66 0.926159
Target:  5'- gGGCggugGGGGuGCGGGggcGGUGggggUGCg -3'
miRNA:   3'- aCCGa---CCUCuCGCUCga-CCACaa--ACG- -5'
21676 5' -55 NC_004812.1 + 148644 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 27808 0.66 0.926159
Target:  5'- gGGCcGGGGGGgGAGCgGGgGUUcgacggGCg -3'
miRNA:   3'- aCCGaCCUCUCgCUCGaCCaCAAa-----CG- -5'
21676 5' -55 NC_004812.1 + 148540 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 130453 0.66 0.926159
Target:  5'- gGcGCUGGAGGGCG-GCcGGcGg--GCg -3'
miRNA:   3'- aC-CGACCUCUCGCuCGaCCaCaaaCG- -5'
21676 5' -55 NC_004812.1 + 78783 0.66 0.926159
Target:  5'- uUGGCUGGGGucgggggucGGCcGGCUGGggucggggGUcgGCc -3'
miRNA:   3'- -ACCGACCUC---------UCGcUCGACCa-------CAaaCG- -5'
21676 5' -55 NC_004812.1 + 78705 0.66 0.926159
Target:  5'- uUGGCUGGGGucgggggucGGCcGGCUGGggucggggGUcgGCc -3'
miRNA:   3'- -ACCGACCUC---------UCGcUCGACCa-------CAaaCG- -5'
21676 5' -55 NC_004812.1 + 148618 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 86150 0.66 0.908743
Target:  5'- cUGGCUGGAG-GUcucGGUUGcGUGUgcGCg -3'
miRNA:   3'- -ACCGACCUCuCGc--UCGAC-CACAaaCG- -5'
21676 5' -55 NC_004812.1 + 148773 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5'
21676 5' -55 NC_004812.1 + 148721 0.66 0.931472
Target:  5'- gGGaggGGAGGGCGAGg-GGUGc--GCg -3'
miRNA:   3'- aCCga-CCUCUCGCUCgaCCACaaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.