miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21678 3' -49.9 NC_004812.1 + 124053 0.66 0.997772
Target:  5'- uGCUGGGggGcCGCGgCCAGCUgcgcccgcgugcuccUCUUCa- -3'
miRNA:   3'- -UGGCUCuuC-GUGU-GGUUGA---------------AGAAGcu -5'
21678 3' -49.9 NC_004812.1 + 139572 0.66 0.99761
Target:  5'- gACCGAGgcGCccccCGCCGACccCUUCa- -3'
miRNA:   3'- -UGGCUCuuCGu---GUGGUUGaaGAAGcu -5'
21678 3' -49.9 NC_004812.1 + 38922 0.66 0.99761
Target:  5'- cCCGGGggGCGCggGCCGGCcUCcgcCGGc -3'
miRNA:   3'- uGGCUCuuCGUG--UGGUUGaAGaa-GCU- -5'
21678 3' -49.9 NC_004812.1 + 8021 0.66 0.99761
Target:  5'- cCCGGGggGCGCggGCCGGCcUCcgcCGGc -3'
miRNA:   3'- uGGCUCuuCGUG--UGGUUGaAGaa-GCU- -5'
21678 3' -49.9 NC_004812.1 + 148791 0.66 0.997159
Target:  5'- cGCCGAGAcGCcCGCCGagacagguagGCUUCUcccgCGGc -3'
miRNA:   3'- -UGGCUCUuCGuGUGGU----------UGAAGAa---GCU- -5'
21678 3' -49.9 NC_004812.1 + 6802 0.66 0.997159
Target:  5'- cUCGGGggGCGCGCCgGGCgUCUggGGc -3'
miRNA:   3'- uGGCUCuuCGUGUGG-UUGaAGAagCU- -5'
21678 3' -49.9 NC_004812.1 + 117890 0.66 0.997159
Target:  5'- cGCCGAGAcGCcCGCCGagacagguagGCUUCUcccgCGGc -3'
miRNA:   3'- -UGGCUCUuCGuGUGGU----------UGAAGAa---GCU- -5'
21678 3' -49.9 NC_004812.1 + 37703 0.66 0.997159
Target:  5'- cUCGGGggGCGCGCCgGGCgUCUggGGc -3'
miRNA:   3'- uGGCUCuuCGUGUGG-UUGaAGAagCU- -5'
21678 3' -49.9 NC_004812.1 + 50167 0.66 0.99664
Target:  5'- uGCUgGAGAcGGC-CGCCAGCgccgcgaUCUUCGAg -3'
miRNA:   3'- -UGG-CUCU-UCGuGUGGUUGa------AGAAGCU- -5'
21678 3' -49.9 NC_004812.1 + 66742 0.66 0.99664
Target:  5'- uGCCGucGGAgcAGCGCGCCGGCcUCgcgcaCGAa -3'
miRNA:   3'- -UGGC--UCU--UCGUGUGGUUGaAGaa---GCU- -5'
21678 3' -49.9 NC_004812.1 + 135188 0.66 0.996045
Target:  5'- cGCCGcuucaAGggGCGCugCGACgcg-UCGGc -3'
miRNA:   3'- -UGGC-----UCuuCGUGugGUUGaagaAGCU- -5'
21678 3' -49.9 NC_004812.1 + 134800 0.66 0.996045
Target:  5'- cGCCGAGAucGC-CGCCcGCUUCUg--- -3'
miRNA:   3'- -UGGCUCUu-CGuGUGGuUGAAGAagcu -5'
21678 3' -49.9 NC_004812.1 + 137579 0.66 0.995981
Target:  5'- gGCCGAGAGGCugccgcccgcgcuGCGCCGGCccgCggccgCGGg -3'
miRNA:   3'- -UGGCUCUUCG-------------UGUGGUUGaa-Gaa---GCU- -5'
21678 3' -49.9 NC_004812.1 + 29074 0.66 0.995367
Target:  5'- cGCCGAccGAGGCcCGCCGGCg---UCGGc -3'
miRNA:   3'- -UGGCU--CUUCGuGUGGUUGaagaAGCU- -5'
21678 3' -49.9 NC_004812.1 + 13256 0.66 0.995367
Target:  5'- uACCGGGAGGC-CuCCGACg---UCGGg -3'
miRNA:   3'- -UGGCUCUUCGuGuGGUUGaagaAGCU- -5'
21678 3' -49.9 NC_004812.1 + 30873 0.66 0.995367
Target:  5'- gGCCGAgGggGCGCGCuCAGCgcg--CGGc -3'
miRNA:   3'- -UGGCU-CuuCGUGUG-GUUGaagaaGCU- -5'
21678 3' -49.9 NC_004812.1 + 154583 0.66 0.995367
Target:  5'- cGCCGAccGAGGCcCGCCGGCg---UCGGc -3'
miRNA:   3'- -UGGCU--CUUCGuGUGGUUGaagaAGCU- -5'
21678 3' -49.9 NC_004812.1 + 144192 0.66 0.995367
Target:  5'- gACCuGGAAGCACGCgAGCgcCggCGAc -3'
miRNA:   3'- -UGGcUCUUCGUGUGgUUGaaGaaGCU- -5'
21678 3' -49.9 NC_004812.1 + 55803 0.66 0.995367
Target:  5'- cCCGAGAcgcgccAGCACGCggcgCAGCgccUCUUCGu -3'
miRNA:   3'- uGGCUCU------UCGUGUG----GUUGa--AGAAGCu -5'
21678 3' -49.9 NC_004812.1 + 39649 0.67 0.994087
Target:  5'- cACCGAcagcccgagcuccagGAAGCGCACCAGCgacagCGu -3'
miRNA:   3'- -UGGCU---------------CUUCGUGUGGUUGaagaaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.