miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21683 5' -57.4 NC_004812.1 + 3036 0.66 0.885085
Target:  5'- cAGAgGCGGUugcccagcgCGGcGAGcaGGAAGGAGAGGc -3'
miRNA:   3'- -UCU-CGCCG---------GCC-CUC--UCUUCCUCUUCc -5'
21683 5' -57.4 NC_004812.1 + 12824 0.66 0.885085
Target:  5'- gGGAGUGGgCGGGgaAGGGccgauGGGGcgcGGGAGGa -3'
miRNA:   3'- -UCUCGCCgGCCC--UCUC-----UUCC---UCUUCC- -5'
21683 5' -57.4 NC_004812.1 + 109167 0.66 0.885085
Target:  5'- cGGGCcugGGgCGGGAGGcGguGGAGAGGu -3'
miRNA:   3'- uCUCG---CCgGCCCUCU-CuuCCUCUUCc -5'
21683 5' -57.4 NC_004812.1 + 128545 0.66 0.885085
Target:  5'- cAGAgGCGGUugcccagcgCGGcGAGcaGGAAGGAGAGGc -3'
miRNA:   3'- -UCU-CGCCG---------GCC-CUC--UCUUCCUCUUCc -5'
21683 5' -57.4 NC_004812.1 + 17416 0.66 0.885085
Target:  5'- gGGGGUGGUggUGGGGGcGggGGuGgcGGc -3'
miRNA:   3'- -UCUCGCCG--GCCCUCuCuuCCuCuuCC- -5'
21683 5' -57.4 NC_004812.1 + 105363 0.66 0.885085
Target:  5'- -cGGUGGcCCGcGGAGAcGGGGAGugguGGGa -3'
miRNA:   3'- ucUCGCC-GGC-CCUCUcUUCCUCu---UCC- -5'
21683 5' -57.4 NC_004812.1 + 57335 0.66 0.87817
Target:  5'- uGuGUGuG-UGGGGGGGggGGAGAGGa -3'
miRNA:   3'- uCuCGC-CgGCCCUCUCuuCCUCUUCc -5'
21683 5' -57.4 NC_004812.1 + 36443 0.66 0.87817
Target:  5'- aAGAccGCGGCCGcGuugucGAGGAGcGGGggGGc -3'
miRNA:   3'- -UCU--CGCCGGCcCu----CUCUUC-CUCuuCC- -5'
21683 5' -57.4 NC_004812.1 + 77132 0.66 0.87817
Target:  5'- -uGGCGGUCGGu-GAGGAGGccGGgcGGg -3'
miRNA:   3'- ucUCGCCGGCCcuCUCUUCC--UCuuCC- -5'
21683 5' -57.4 NC_004812.1 + 77954 0.66 0.87817
Target:  5'- cGGGGUGGCgGGGGcGAaGAGGGuGuccGGGc -3'
miRNA:   3'- -UCUCGCCGgCCCU-CU-CUUCCuCu--UCC- -5'
21683 5' -57.4 NC_004812.1 + 72293 0.66 0.87817
Target:  5'- aGGuGCgGGCCGGGGcGGggGGAcGGAu- -3'
miRNA:   3'- -UCuCG-CCGGCCCUcUCuuCCU-CUUcc -5'
21683 5' -57.4 NC_004812.1 + 14461 0.66 0.87817
Target:  5'- cGuGUGGCCGGaGGGcGcGGGGGcGGGg -3'
miRNA:   3'- uCuCGCCGGCC-CUCuCuUCCUCuUCC- -5'
21683 5' -57.4 NC_004812.1 + 17841 0.66 0.877466
Target:  5'- -aGGCGGCCGGGAucGAGcgccacaGAGGcaccgcGggGGc -3'
miRNA:   3'- ucUCGCCGGCCCU--CUC-------UUCCu-----CuuCC- -5'
21683 5' -57.4 NC_004812.1 + 148560 0.66 0.871041
Target:  5'- cGGGcCGGCCGGGcgccGGGGGGugccGGcGGAGGc -3'
miRNA:   3'- uCUC-GCCGGCCC----UCUCUU----CCuCUUCC- -5'
21683 5' -57.4 NC_004812.1 + 25362 0.66 0.871041
Target:  5'- cGGAgGCGcGUgugugCGGaGAGAGAcacAGGGGGAGGu -3'
miRNA:   3'- -UCU-CGC-CG-----GCC-CUCUCU---UCCUCUUCC- -5'
21683 5' -57.4 NC_004812.1 + 117659 0.66 0.871041
Target:  5'- cGGGcCGGCCGGGcgccGGGGGGugccGGcGGAGGc -3'
miRNA:   3'- uCUC-GCCGGCCC----UCUCUU----CCuCUUCC- -5'
21683 5' -57.4 NC_004812.1 + 150870 0.66 0.871041
Target:  5'- cGGAgGCGcGUgugugCGGaGAGAGAcacAGGGGGAGGu -3'
miRNA:   3'- -UCU-CGC-CG-----GCC-CUCUCU---UCCUCUUCC- -5'
21683 5' -57.4 NC_004812.1 + 59053 0.66 0.871041
Target:  5'- cAGGGCGccaCGGGcGGAGA-GGAcGAAGGu -3'
miRNA:   3'- -UCUCGCcg-GCCC-UCUCUuCCU-CUUCC- -5'
21683 5' -57.4 NC_004812.1 + 83835 0.66 0.871041
Target:  5'- gAGGGCgcccGGCCGucuccGGGGGGAGcGGcGggGGg -3'
miRNA:   3'- -UCUCG----CCGGC-----CCUCUCUU-CCuCuuCC- -5'
21683 5' -57.4 NC_004812.1 + 64360 0.66 0.870317
Target:  5'- uGGAGcCGGaCCGGGAcuaccucgccaucGAGGugGGGGGcAGGc -3'
miRNA:   3'- -UCUC-GCC-GGCCCU-------------CUCU--UCCUCuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.