miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21684 5' -56.5 NC_004812.1 + 108142 0.66 0.903501
Target:  5'- cCGCGCG-GC-CGGCG--UACACCa- -3'
miRNA:   3'- aGCGCGCuCGuGUCGCucAUGUGGac -5'
21684 5' -56.5 NC_004812.1 + 26584 0.66 0.903501
Target:  5'- cCGCGCGucaccGC-CGGCGAcGUggagcucgaccGCGCCUGc -3'
miRNA:   3'- aGCGCGCu----CGuGUCGCU-CA-----------UGUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 147098 0.66 0.903501
Target:  5'- aCGCGCGAaacaggugGCgGCAGUgggugGAGUACagGCCUGc -3'
miRNA:   3'- aGCGCGCU--------CG-UGUCG-----CUCAUG--UGGAC- -5'
21684 5' -56.5 NC_004812.1 + 152092 0.66 0.903501
Target:  5'- cCGCGCGucaccGC-CGGCGAcGUggagcucgaccGCGCCUGc -3'
miRNA:   3'- aGCGCGCu----CGuGUCGCU-CA-----------UGUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 56961 0.66 0.903501
Target:  5'- gCGcCGCGAGCuugccGCGGCcgauccggGGGUcgcaGCGCCUGa -3'
miRNA:   3'- aGC-GCGCUCG-----UGUCG--------CUCA----UGUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 71918 0.66 0.903501
Target:  5'- gCGcCGCGGGCgcugcaGCGGCGAGgacgGCGCg-- -3'
miRNA:   3'- aGC-GCGCUCG------UGUCGCUCa---UGUGgac -5'
21684 5' -56.5 NC_004812.1 + 58908 0.66 0.899702
Target:  5'- aCGCGCGccacgucccccucgaAGCcggucuCGGCGGGggcCGCCUGg -3'
miRNA:   3'- aGCGCGC---------------UCGu-----GUCGCUCau-GUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 94695 0.66 0.897123
Target:  5'- cCGCGCGGcggcgcGUGCGGCccGAGcACAUCUGg -3'
miRNA:   3'- aGCGCGCU------CGUGUCG--CUCaUGUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 80697 0.66 0.897123
Target:  5'- gCGCGcCGAGCaggcccucGCGGCGA--ACGCCa- -3'
miRNA:   3'- aGCGC-GCUCG--------UGUCGCUcaUGUGGac -5'
21684 5' -56.5 NC_004812.1 + 79184 0.66 0.897123
Target:  5'- cUGCGgGAGCugguGCAGCGcGGgcgAgACCUGg -3'
miRNA:   3'- aGCGCgCUCG----UGUCGC-UCa--UgUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 46903 0.66 0.897123
Target:  5'- -gGgGCGGGCGCGGCGGc--CGCCg- -3'
miRNA:   3'- agCgCGCUCGUGUCGCUcauGUGGac -5'
21684 5' -56.5 NC_004812.1 + 28559 0.66 0.897123
Target:  5'- cCGCGCGAGUACcgccGCGccGUGCugCc- -3'
miRNA:   3'- aGCGCGCUCGUGu---CGCu-CAUGugGac -5'
21684 5' -56.5 NC_004812.1 + 98387 0.66 0.897123
Target:  5'- cUCGgGCG-GCGCGGCGgccgcGGggcgGCGCCg- -3'
miRNA:   3'- -AGCgCGCuCGUGUCGC-----UCa---UGUGGac -5'
21684 5' -56.5 NC_004812.1 + 82677 0.66 0.897123
Target:  5'- -gGUGC-AGCAgGGCGAGcagGCGCCg- -3'
miRNA:   3'- agCGCGcUCGUgUCGCUCa--UGUGGac -5'
21684 5' -56.5 NC_004812.1 + 19625 0.66 0.897123
Target:  5'- cCGCGCGuccGGUcucGCGGCGAcGUGgGCCg- -3'
miRNA:   3'- aGCGCGC---UCG---UGUCGCU-CAUgUGGac -5'
21684 5' -56.5 NC_004812.1 + 63010 0.66 0.897123
Target:  5'- -aGCGCGGGCcgccGCGuccGCGAGcgcGCGCUUGg -3'
miRNA:   3'- agCGCGCUCG----UGU---CGCUCa--UGUGGAC- -5'
21684 5' -56.5 NC_004812.1 + 154067 0.66 0.897123
Target:  5'- cCGCGCGAGUACcgccGCGccGUGCugCc- -3'
miRNA:   3'- aGCGCGCUCGUGu---CGCu-CAUGugGac -5'
21684 5' -56.5 NC_004812.1 + 22687 0.66 0.896473
Target:  5'- cCGCGaUGGGCAggcCGGCGAGUAgaggcccCGCCg- -3'
miRNA:   3'- aGCGC-GCUCGU---GUCGCUCAU-------GUGGac -5'
21684 5' -56.5 NC_004812.1 + 142436 0.66 0.893186
Target:  5'- cCGCGCccuggcgacgcuggaGAGCACcauggggcugGGCGAGgGCGcCCUGa -3'
miRNA:   3'- aGCGCG---------------CUCGUG----------UCGCUCaUGU-GGAC- -5'
21684 5' -56.5 NC_004812.1 + 125048 0.66 0.890516
Target:  5'- cUCGCGCcgcccGGGCGCGGCGuuGGUgggcGCACUc- -3'
miRNA:   3'- -AGCGCG-----CUCGUGUCGC--UCA----UGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.