miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21685 5' -52.8 NC_004812.1 + 74925 0.66 0.983051
Target:  5'- aGgcGC-GCGAGCGGGUcGggggagCCGUCGCg -3'
miRNA:   3'- gCuuUGaCGCUUGCCUA-Ca-----GGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 67369 0.66 0.983051
Target:  5'- ----cCUGCGAcaccguggcggcGCGGGccUCCGCCGCc -3'
miRNA:   3'- gcuuuGACGCU------------UGCCUacAGGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 143316 0.66 0.983051
Target:  5'- gGAGAC-GCGGACGcc---CCGCCGCg -3'
miRNA:   3'- gCUUUGaCGCUUGCcuacaGGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 89572 0.66 0.983051
Target:  5'- cCGAcGACgGCGGGCGG---UUCGCCGCc -3'
miRNA:   3'- -GCU-UUGaCGCUUGCCuacAGGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 154904 0.66 0.982855
Target:  5'- gCGGAGuCUGgcggaguCGGGCGGggGUCCGCUu- -3'
miRNA:   3'- -GCUUU-GAC-------GCUUGCCuaCAGGCGGug -5'
21685 5' -52.8 NC_004812.1 + 29396 0.66 0.982855
Target:  5'- gCGGAGuCUGgcggaguCGGGCGGggGUCCGCUu- -3'
miRNA:   3'- -GCUUU-GAC-------GCUUGCCuaCAGGCGGug -5'
21685 5' -52.8 NC_004812.1 + 66642 0.66 0.98101
Target:  5'- gCGAAGCgggagGCGcguCGGGaGgcgcgCCGCCGCu -3'
miRNA:   3'- -GCUUUGa----CGCuu-GCCUaCa----GGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 45258 0.66 0.98101
Target:  5'- gCGAcgAGCUGgGGggcccGCGGGgucgGcgCCGCCGCg -3'
miRNA:   3'- -GCU--UUGACgCU-----UGCCUa---Ca-GGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 1325 0.66 0.98101
Target:  5'- gCGGuccGCggGCGGuccGCGGGcgGUCCGCCGg -3'
miRNA:   3'- -GCUu--UGa-CGCU---UGCCUa-CAGGCGGUg -5'
21685 5' -52.8 NC_004812.1 + 32226 0.66 0.98101
Target:  5'- gCGGuccGCggGCGGuccGCGGGcgGUCCGCCGg -3'
miRNA:   3'- -GCUu--UGa-CGCU---UGCCUa-CAGGCGGUg -5'
21685 5' -52.8 NC_004812.1 + 99631 0.66 0.978792
Target:  5'- aGgcGCUGCGAccccCGGAUcggCCGCgGCa -3'
miRNA:   3'- gCuuUGACGCUu---GCCUAca-GGCGgUG- -5'
21685 5' -52.8 NC_004812.1 + 36710 0.66 0.978792
Target:  5'- gCGggGCUGCGGggcGCGGcgGgcUCUGCgGg -3'
miRNA:   3'- -GCuuUGACGCU---UGCCuaC--AGGCGgUg -5'
21685 5' -52.8 NC_004812.1 + 35043 0.66 0.978792
Target:  5'- uCGGggUUcaGgGAGCGGAUG-CCGCgCGCc -3'
miRNA:   3'- -GCUuuGA--CgCUUGCCUACaGGCG-GUG- -5'
21685 5' -52.8 NC_004812.1 + 89944 0.66 0.978792
Target:  5'- aCGggGCccGCGAGCGGcgG-CgCGCCu- -3'
miRNA:   3'- -GCuuUGa-CGCUUGCCuaCaG-GCGGug -5'
21685 5' -52.8 NC_004812.1 + 5809 0.66 0.978792
Target:  5'- gCGggGCUGCGGggcGCGGcgGgcUCUGCgGg -3'
miRNA:   3'- -GCuuUGACGCU---UGCCuaC--AGGCGgUg -5'
21685 5' -52.8 NC_004812.1 + 128546 0.66 0.977372
Target:  5'- aGAGGCgguugcccagcgcgGCGAGCaGGAaGgagaggCCGCCGCg -3'
miRNA:   3'- gCUUUGa-------------CGCUUG-CCUaCa-----GGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 3037 0.66 0.977372
Target:  5'- aGAGGCgguugcccagcgcgGCGAGCaGGAaGgagaggCCGCCGCg -3'
miRNA:   3'- gCUUUGa-------------CGCUUG-CCUaCa-----GGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 140405 0.66 0.976387
Target:  5'- ------gGCGcGCGGcccggGUCCGCCGCg -3'
miRNA:   3'- gcuuugaCGCuUGCCua---CAGGCGGUG- -5'
21685 5' -52.8 NC_004812.1 + 106067 0.66 0.976387
Target:  5'- gGAGACUgGCGcgUGGGUGUCgCgGCCuGCg -3'
miRNA:   3'- gCUUUGA-CGCuuGCCUACAG-G-CGG-UG- -5'
21685 5' -52.8 NC_004812.1 + 32165 0.66 0.973788
Target:  5'- gCGggGCgcccccgcGCGGAcCGGGUGccUCCggGCCACg -3'
miRNA:   3'- -GCuuUGa-------CGCUU-GCCUAC--AGG--CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.