miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21688 3' -54.6 NC_004812.1 + 86720 0.66 0.945217
Target:  5'- uCGG--AGGAGCGGCcGGAcgACGacGGCGa -3'
miRNA:   3'- -GCUuaUCCUCGCCGaCCU--UGU--CCGUg -5'
21688 3' -54.6 NC_004812.1 + 104949 0.66 0.945217
Target:  5'- uGGAUcGGGGucGCGGCgGGGAgAGGgGCu -3'
miRNA:   3'- gCUUA-UCCU--CGCCGaCCUUgUCCgUG- -5'
21688 3' -54.6 NC_004812.1 + 115212 0.66 0.945217
Target:  5'- gCGAGggcgAGGGGCGuucguggcGUUGGGGguGGUGCa -3'
miRNA:   3'- -GCUUa---UCCUCGC--------CGACCUUguCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 6467 0.66 0.945217
Target:  5'- gCGGGcccgGGGAGCgGGCccugcgGGuACAGGCAa -3'
miRNA:   3'- -GCUUa---UCCUCG-CCGa-----CCuUGUCCGUg -5'
21688 3' -54.6 NC_004812.1 + 76838 0.66 0.945217
Target:  5'- ----gGGGGcgcgccugcGCGGCgucGGGCAGGCACg -3'
miRNA:   3'- gcuuaUCCU---------CGCCGac-CUUGUCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 98494 0.66 0.945217
Target:  5'- uGggUGGG-GCGGCgcGGGGCgccgggucccGGGCGg -3'
miRNA:   3'- gCuuAUCCuCGCCGa-CCUUG----------UCCGUg -5'
21688 3' -54.6 NC_004812.1 + 37368 0.66 0.945217
Target:  5'- gCGGGcccgGGGAGCgGGCccugcgGGuACAGGCAa -3'
miRNA:   3'- -GCUUa---UCCUCG-CCGa-----CCuUGUCCGUg -5'
21688 3' -54.6 NC_004812.1 + 71242 0.66 0.945217
Target:  5'- gCGGcgGGGAcgGCGGCggUGGGccgGCucgGGGCGCg -3'
miRNA:   3'- -GCUuaUCCU--CGCCG--ACCU---UG---UCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 76211 0.66 0.945217
Target:  5'- gGGAUGGGcagaccgcGCGGaagggGGGGCGGGCGg -3'
miRNA:   3'- gCUUAUCCu-------CGCCga---CCUUGUCCGUg -5'
21688 3' -54.6 NC_004812.1 + 135898 0.66 0.945217
Target:  5'- gGGcgGGGGcGCGGCUcgcagagggaccGGAAgCAGGCGg -3'
miRNA:   3'- gCUuaUCCU-CGCCGA------------CCUU-GUCCGUg -5'
21688 3' -54.6 NC_004812.1 + 122680 0.66 0.945217
Target:  5'- cCGAGgccAGGAGCcggugcagcucGGCgUGGAGgCGGGCGg -3'
miRNA:   3'- -GCUUa--UCCUCG-----------CCG-ACCUU-GUCCGUg -5'
21688 3' -54.6 NC_004812.1 + 95861 0.66 0.940597
Target:  5'- cCGAGgcgcGGGuGCGGUgggccgagGGGGCGGGCc- -3'
miRNA:   3'- -GCUUa---UCCuCGCCGa-------CCUUGUCCGug -5'
21688 3' -54.6 NC_004812.1 + 7435 0.66 0.940597
Target:  5'- gGAAgAGGAGgGGuCUGGGAgagaaGGGCGg -3'
miRNA:   3'- gCUUaUCCUCgCC-GACCUUg----UCCGUg -5'
21688 3' -54.6 NC_004812.1 + 145349 0.66 0.940597
Target:  5'- -----cGGGGCGGCcgUGGGGCuGGC-Cg -3'
miRNA:   3'- gcuuauCCUCGCCG--ACCUUGuCCGuG- -5'
21688 3' -54.6 NC_004812.1 + 155718 0.66 0.940597
Target:  5'- gGGAgGGGGGUGGggGGuGGgGGGCGCg -3'
miRNA:   3'- gCUUaUCCUCGCCgaCC-UUgUCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 91075 0.66 0.940597
Target:  5'- uCGAAgaccGGGGGCGaGggGGGGCgccagGGGCGCg -3'
miRNA:   3'- -GCUUa---UCCUCGC-CgaCCUUG-----UCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 154739 0.66 0.940597
Target:  5'- gCGGGcGGGGGuCGcGgaGGAGCGGGC-Cg -3'
miRNA:   3'- -GCUUaUCCUC-GC-CgaCCUUGUCCGuG- -5'
21688 3' -54.6 NC_004812.1 + 124252 0.66 0.940597
Target:  5'- cCGggUcgAGG-GCGGUcgugGGGGCGGGgACc -3'
miRNA:   3'- -GCuuA--UCCuCGCCGa---CCUUGUCCgUG- -5'
21688 3' -54.6 NC_004812.1 + 30210 0.66 0.940597
Target:  5'- gGGAgGGGGGUGGggGGuGGgGGGCGCg -3'
miRNA:   3'- gCUUaUCCUCGCCgaCC-UUgUCCGUG- -5'
21688 3' -54.6 NC_004812.1 + 72039 0.66 0.940597
Target:  5'- aCGGucuggGGGGGCGGggGGucGgGGGCGCu -3'
miRNA:   3'- -GCUua---UCCUCGCCgaCCu-UgUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.