miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21688 5' -57.9 NC_004812.1 + 3951 0.66 0.844879
Target:  5'- cGCGCgGCCgccagcccgggcacgGCggCCAGGUCGCcGC-CGa -3'
miRNA:   3'- -CGCG-CGGa--------------CGa-GGUCCAGCGuUGuGU- -5'
21688 5' -57.9 NC_004812.1 + 100838 0.66 0.844081
Target:  5'- cGCGgGgCUGC-CCAGGg-GCAggGCGCGa -3'
miRNA:   3'- -CGCgCgGACGaGGUCCagCGU--UGUGU- -5'
21688 5' -57.9 NC_004812.1 + 117796 0.66 0.844081
Target:  5'- cGCGCGCCgcaGCcCCcgacaccugcGGGcgacccucgagaUCGCGACGCGa -3'
miRNA:   3'- -CGCGCGGa--CGaGG----------UCC------------AGCGUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 21410 0.66 0.844081
Target:  5'- cGCGCGCCga---CGcGUCGCAGCGCc -3'
miRNA:   3'- -CGCGCGGacgagGUcCAGCGUUGUGu -5'
21688 5' -57.9 NC_004812.1 + 74990 0.66 0.844081
Target:  5'- cCGCGCgUGCUCCAGccaGUCGac-CGCc -3'
miRNA:   3'- cGCGCGgACGAGGUC---CAGCguuGUGu -5'
21688 5' -57.9 NC_004812.1 + 111809 0.66 0.844081
Target:  5'- uGCGCGUg-GCgagCCAGGgacugaUCGcCAGCACGg -3'
miRNA:   3'- -CGCGCGgaCGa--GGUCC------AGC-GUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 83570 0.66 0.844081
Target:  5'- cGUGCGCCccGUg-CAGGUCGCAuagcCGCu -3'
miRNA:   3'- -CGCGCGGa-CGagGUCCAGCGUu---GUGu -5'
21688 5' -57.9 NC_004812.1 + 55837 0.66 0.844081
Target:  5'- uCGuCGCuCUGCUCgGGGUUGaCGAgGCGc -3'
miRNA:   3'- cGC-GCG-GACGAGgUCCAGC-GUUgUGU- -5'
21688 5' -57.9 NC_004812.1 + 12139 0.66 0.844081
Target:  5'- gGCGCGCg-GCgCCGGGccCGCucaauACACAa -3'
miRNA:   3'- -CGCGCGgaCGaGGUCCa-GCGu----UGUGU- -5'
21688 5' -57.9 NC_004812.1 + 101768 0.66 0.844081
Target:  5'- cGCGaCGUCUuCUCCAuccucuacucGGUCuGCAGCACc -3'
miRNA:   3'- -CGC-GCGGAcGAGGU----------CCAG-CGUUGUGu -5'
21688 5' -57.9 NC_004812.1 + 140957 0.66 0.844081
Target:  5'- cGCGgGCgUGCUCgCGGaGcgCGCGACAg- -3'
miRNA:   3'- -CGCgCGgACGAG-GUC-Ca-GCGUUGUgu -5'
21688 5' -57.9 NC_004812.1 + 55291 0.66 0.844081
Target:  5'- -aGCGCCUGCacgCCgAGGUgGgcuCGGCGCGg -3'
miRNA:   3'- cgCGCGGACGa--GG-UCCAgC---GUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 78544 0.66 0.842481
Target:  5'- -gGCuGCCgcaaggggGCUCCGGGggcuggcgauccCGCAGCGCGu -3'
miRNA:   3'- cgCG-CGGa-------CGAGGUCCa-----------GCGUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 28724 0.66 0.839257
Target:  5'- cCGCGCCgacaccagaccgucGUUCCggGGGUCGgAACGCu -3'
miRNA:   3'- cGCGCGGa-------------CGAGG--UCCAGCgUUGUGu -5'
21688 5' -57.9 NC_004812.1 + 28431 0.66 0.836003
Target:  5'- gGUGCGUCUcCgCCAGG-CGcCGACGCAg -3'
miRNA:   3'- -CGCGCGGAcGaGGUCCaGC-GUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 755 0.66 0.836003
Target:  5'- cGCGCGCCUcGcCUCCcGG-CGCcGCGg- -3'
miRNA:   3'- -CGCGCGGA-C-GAGGuCCaGCGuUGUgu -5'
21688 5' -57.9 NC_004812.1 + 62321 0.66 0.836003
Target:  5'- aGCGCaCCcagGCgcacgcCCGGGcCGCGGCGCGc -3'
miRNA:   3'- -CGCGcGGa--CGa-----GGUCCaGCGUUGUGU- -5'
21688 5' -57.9 NC_004812.1 + 105473 0.66 0.836003
Target:  5'- cGCGCGCCUcC-CCGGGguaGUAggGCGCGu -3'
miRNA:   3'- -CGCGCGGAcGaGGUCCag-CGU--UGUGU- -5'
21688 5' -57.9 NC_004812.1 + 113763 0.66 0.836003
Target:  5'- gGCGCGCCUGC-CgAcGG-CGCcaAGCGCc -3'
miRNA:   3'- -CGCGCGGACGaGgU-CCaGCG--UUGUGu -5'
21688 5' -57.9 NC_004812.1 + 17616 0.66 0.836003
Target:  5'- cCGCGCCgGCcucgugUCCugguGGUCGUcgGACGCGc -3'
miRNA:   3'- cGCGCGGaCG------AGGu---CCAGCG--UUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.