miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 71999 0.66 0.975603
Target:  5'- gUCGAGGAgauagggcCGuCGCGGCgaGCcccggugGGUCGCa -3'
miRNA:   3'- -AGCUUCUa-------GC-GCGUCGa-CGa------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 70118 0.66 0.975603
Target:  5'- gCGccGggCGCGUGGCUGCgGccCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGACGaCuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 26403 0.66 0.975603
Target:  5'- uUCGggGAUCGCcCG--UGggGGUCGCg -3'
miRNA:   3'- -AGCuuCUAGCGcGUcgACgaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 42026 0.66 0.975603
Target:  5'- gCGggGG-CGCGCGGC-GCcaagCGCa -3'
miRNA:   3'- aGCuuCUaGCGCGUCGaCGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 120369 0.66 0.975603
Target:  5'- gCGggGG-CGCGCGGCcGggGG-CGCg -3'
miRNA:   3'- aGCuuCUaGCGCGUCGaCgaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 130703 0.66 0.975603
Target:  5'- gCGAcGcgCGCccGCGGC-GCUGggCGCg -3'
miRNA:   3'- aGCUuCuaGCG--CGUCGaCGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 44485 0.66 0.975603
Target:  5'- gUCGAAGAU-GCGCcGCUGgaucucCUGcUCGUa -3'
miRNA:   3'- -AGCUUCUAgCGCGuCGAC------GACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 102946 0.66 0.975603
Target:  5'- gCGggGGUgGCGgGGggGCgucggGGUCGUa -3'
miRNA:   3'- aGCuuCUAgCGCgUCgaCGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 37062 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 3220 0.66 0.972939
Target:  5'- cCGAGG--CGCGCGGCggGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGa-CGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 3924 0.66 0.972939
Target:  5'- gCGggGc-CGCGCGGCgGCggcacgGcgCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGaCGa-----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 83493 0.66 0.972939
Target:  5'- gUCGggGAgCGCGaCGGCcagGC-GGUgCGCg -3'
miRNA:   3'- -AGCuuCUaGCGC-GUCGa--CGaCUA-GCG- -5'
21690 3' -53.3 NC_004812.1 + 129432 0.66 0.972939
Target:  5'- gCGggGc-CGCGCGGCgGCggcacgGcgCGCg -3'
miRNA:   3'- aGCuuCuaGCGCGUCGaCGa-----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 24502 0.66 0.972939
Target:  5'- aCGggGGgccccCGCGCcgcgggGGCUGC-GGUCGg -3'
miRNA:   3'- aGCuuCUa----GCGCG------UCGACGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 6161 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 117026 0.66 0.971242
Target:  5'- aCGAGGGgcgCGUGCAGUUcgaggugcaccagccGCUcAUCGCc -3'
miRNA:   3'- aGCUUCUa--GCGCGUCGA---------------CGAcUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 144071 0.66 0.970069
Target:  5'- cCGggGGccUgGCGgAGCUGCUGGagGa -3'
miRNA:   3'- aGCuuCU--AgCGCgUCGACGACUagCg -5'
21690 3' -53.3 NC_004812.1 + 153460 0.66 0.970069
Target:  5'- cCGAGGA-CGUGC-GCgUGCUGGUgcucuaCGCg -3'
miRNA:   3'- aGCUUCUaGCGCGuCG-ACGACUA------GCG- -5'
21690 3' -53.3 NC_004812.1 + 27951 0.66 0.970069
Target:  5'- cCGAGGA-CGUGC-GCgUGCUGGUgcucuaCGCg -3'
miRNA:   3'- aGCUUCUaGCGCGuCG-ACGACUA------GCG- -5'
21690 3' -53.3 NC_004812.1 + 11921 0.66 0.970069
Target:  5'- gUGggGGUgGgGCGGCgggGCgggGGUgGCg -3'
miRNA:   3'- aGCuuCUAgCgCGUCGa--CGa--CUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.