miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 54766 0.66 0.96017
Target:  5'- gCGgcGcgCGgGCGGCUacgggggcgGCUGGUCGg -3'
miRNA:   3'- aGCuuCuaGCgCGUCGA---------CGACUAGCg -5'
21690 3' -53.3 NC_004812.1 + 3220 0.66 0.972939
Target:  5'- cCGAGG--CGCGCGGCggGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGa-CGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 18402 0.66 0.970069
Target:  5'- gCGggGGaCgGCGUAGCaguacGCUgGGUCGCg -3'
miRNA:   3'- aGCuuCUaG-CGCGUCGa----CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 44485 0.66 0.975603
Target:  5'- gUCGAAGAU-GCGCcGCUGgaucucCUGcUCGUa -3'
miRNA:   3'- -AGCUUCUAgCGCGuCGAC------GACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 86745 0.66 0.959805
Target:  5'- cCGggGGUCcgcgucggccaugGCGCAGCgGCgacgcGggCGCg -3'
miRNA:   3'- aGCuuCUAG-------------CGCGUCGaCGa----CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 2719 0.66 0.96017
Target:  5'- cCGGAGGccagcacgGCGCGGC-GCaGGUCGCg -3'
miRNA:   3'- aGCUUCUag------CGCGUCGaCGaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 37062 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 76512 0.66 0.963691
Target:  5'- cCGAGGccGUCGa-CGGCUGCcUGGUCGa -3'
miRNA:   3'- aGCUUC--UAGCgcGUCGACG-ACUAGCg -5'
21690 3' -53.3 NC_004812.1 + 130703 0.66 0.975603
Target:  5'- gCGAcGcgCGCccGCGGC-GCUGggCGCg -3'
miRNA:   3'- aGCUuCuaGCG--CGUCGaCGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 153765 0.66 0.96017
Target:  5'- cUCGgcG-UCGCGCcGCgUGCgggGGUCGUu -3'
miRNA:   3'- -AGCuuCuAGCGCGuCG-ACGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 120369 0.66 0.975603
Target:  5'- gCGggGG-CGCGCGGCcGggGG-CGCg -3'
miRNA:   3'- aGCuuCUaGCGCGUCGaCgaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 83120 0.66 0.96017
Target:  5'- -aGAAGAgcgUUGCcCAGUUGCUGGccCGCg -3'
miRNA:   3'- agCUUCU---AGCGcGUCGACGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 125199 0.66 0.96017
Target:  5'- -gGGAGGUgGCGCGGCgccUGCcGGUCcuGCu -3'
miRNA:   3'- agCUUCUAgCGCGUCG---ACGaCUAG--CG- -5'
21690 3' -53.3 NC_004812.1 + 6161 0.66 0.972939
Target:  5'- gUCGggGGccUGgGCGGCggggGUUgGGUCGCg -3'
miRNA:   3'- -AGCuuCUa-GCgCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 11921 0.66 0.970069
Target:  5'- gUGggGGUgGgGCGGCgggGCgggGGUgGCg -3'
miRNA:   3'- aGCuuCUAgCgCGUCGa--CGa--CUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 71999 0.66 0.975603
Target:  5'- gUCGAGGAgauagggcCGuCGCGGCgaGCcccggugGGUCGCa -3'
miRNA:   3'- -AGCUUCUa-------GC-GCGUCGa-CGa------CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 146991 0.66 0.970069
Target:  5'- gCGAGGGaC-UGCGGCUGCgGGcUCGCu -3'
miRNA:   3'- aGCUUCUaGcGCGUCGACGaCU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 69586 0.66 0.963691
Target:  5'- uUCGuAGAUCGCguaccGCAGCaGCccGAacUCGCg -3'
miRNA:   3'- -AGCuUCUAGCG-----CGUCGaCGa-CU--AGCG- -5'
21690 3' -53.3 NC_004812.1 + 156058 0.67 0.952436
Target:  5'- gCGGGcGUCGCGCGGC-GC--GUCGCc -3'
miRNA:   3'- aGCUUcUAGCGCGUCGaCGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 127577 0.67 0.95642
Target:  5'- gCGAAG-UCGCGgacgaaguggacCAGCUGCUGGaaggccUCGg -3'
miRNA:   3'- aGCUUCuAGCGC------------GUCGACGACU------AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.