Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 106881 | 1.13 | 0.002791 |
Target: 5'- cUCGAAGAUCGCGCAGCUGCUGAUCGCg -3' miRNA: 3'- -AGCUUCUAGCGCGUCGACGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 74745 | 0.84 | 0.201575 |
Target: 5'- cUGGAGcgCGCGCAGCUGCUcGcgCGCg -3' miRNA: 3'- aGCUUCuaGCGCGUCGACGA-CuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 140470 | 0.81 | 0.312538 |
Target: 5'- cUCGAugucccGGUCGCGCAGCUGC--GUCGCc -3' miRNA: 3'- -AGCUu-----CUAGCGCGUCGACGacUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 105169 | 0.78 | 0.427102 |
Target: 5'- gCGggGGUCGCGU-GCgGCUGGUgGCg -3' miRNA: 3'- aGCuuCUAGCGCGuCGaCGACUAgCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 110796 | 0.77 | 0.464121 |
Target: 5'- gUGGAGGcguUCGCGCuagAGCUGCUGGggCGCa -3' miRNA: 3'- aGCUUCU---AGCGCG---UCGACGACUa-GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 13033 | 0.76 | 0.54271 |
Target: 5'- cCGggGGUCGCGgGGCcgGCcccGGUCGCc -3' miRNA: 3'- aGCuuCUAGCGCgUCGa-CGa--CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 81854 | 0.75 | 0.604387 |
Target: 5'- cUCGggGccgCGCGCgAGCaGCUGcgCGCg -3' miRNA: 3'- -AGCuuCua-GCGCG-UCGaCGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 121540 | 0.75 | 0.583666 |
Target: 5'- gCGAGaucGUCGCGCGGCUGgUGG-CGCg -3' miRNA: 3'- aGCUUc--UAGCGCGUCGACgACUaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 137348 | 0.75 | 0.573356 |
Target: 5'- aCGgcGcUCGCccgGCAGCUGCUGggCGCc -3' miRNA: 3'- aGCuuCuAGCG---CGUCGACGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 107940 | 0.75 | 0.614784 |
Target: 5'- cCGAGGAggccggccaUCGCGCGGCgagGCgcggGAUCGg -3' miRNA: 3'- aGCUUCU---------AGCGCGUCGa--CGa---CUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 98313 | 0.75 | 0.583666 |
Target: 5'- cCGgcGG-CGCGCGGgUGCUGGcUCGCg -3' miRNA: 3'- aGCuuCUaGCGCGUCgACGACU-AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 44175 | 0.75 | 0.614784 |
Target: 5'- aUCGAGGGUgUGCGCGGC-GCUGGggGCc -3' miRNA: 3'- -AGCUUCUA-GCGCGUCGaCGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 131354 | 0.74 | 0.656424 |
Target: 5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3' miRNA: 3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 11503 | 0.74 | 0.625194 |
Target: 5'- cCGAcGcGUCGCGCAGCUGCaGGUUGa -3' miRNA: 3'- aGCUuC-UAGCGCGUCGACGaCUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 126627 | 0.74 | 0.652265 |
Target: 5'- aUCGAGGG-CGacggcagccuccgGCAGCUGCUGuUCGCg -3' miRNA: 3'- -AGCUUCUaGCg------------CGUCGACGACuAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 18873 | 0.74 | 0.666805 |
Target: 5'- cCGggGGUCG-GCGGCccGCgGGUCGCc -3' miRNA: 3'- aGCuuCUAGCgCGUCGa-CGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 5846 | 0.74 | 0.656424 |
Target: 5'- cUCGAGGAaC-CGCGGCUGCcgucuacacGAUCGCg -3' miRNA: 3'- -AGCUUCUaGcGCGUCGACGa--------CUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 118844 | 0.74 | 0.646023 |
Target: 5'- gUGGAGGcgcUCGCGCAGCUGgUGGUgGa -3' miRNA: 3'- aGCUUCU---AGCGCGUCGACgACUAgCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 7626 | 0.74 | 0.666805 |
Target: 5'- cCGGAGA-CGCGCGGCgGCcggGGUCGg -3' miRNA: 3'- aGCUUCUaGCGCGUCGaCGa--CUAGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 29785 | 0.74 | 0.666805 |
Target: 5'- gCGAuGGUCGgGCAGCUGgUGGcaaacagacggcUCGCg -3' miRNA: 3'- aGCUuCUAGCgCGUCGACgACU------------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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