miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 110368 0.71 0.799339
Target:  5'- aUCGAGGAcacgaucuUCGCGCucuucugcgcccccgAGCUGCUGGaCGg -3'
miRNA:   3'- -AGCUUCU--------AGCGCG---------------UCGACGACUaGCg -5'
21690 3' -53.3 NC_004812.1 + 91578 0.71 0.795676
Target:  5'- gUUGGAGAagGCGguGCUG--GGUCGCg -3'
miRNA:   3'- -AGCUUCUagCGCguCGACgaCUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 121311 0.71 0.822509
Target:  5'- gCGguGAUCGCGCGGgUGCUGcccacccggcUCGUg -3'
miRNA:   3'- aGCuuCUAGCGCGUCgACGACu---------AGCG- -5'
21690 3' -53.3 NC_004812.1 + 147848 0.71 0.822509
Target:  5'- gUCGAGGcUCuCGCGGCUGCcuggggGGUCGg -3'
miRNA:   3'- -AGCUUCuAGcGCGUCGACGa-----CUAGCg -5'
21690 3' -53.3 NC_004812.1 + 62363 0.71 0.813733
Target:  5'- cCGGAGAUgCGCGuCGGCgUGCacgacGGUCGCc -3'
miRNA:   3'- aGCUUCUA-GCGC-GUCG-ACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 35837 0.71 0.813733
Target:  5'- gUCGcGGuacUUGCGCAGCaGCgcggGGUCGCu -3'
miRNA:   3'- -AGCuUCu--AGCGCGUCGaCGa---CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 66572 0.71 0.813733
Target:  5'- gCGGAGGgaCGaGCGGCUGCgcgucGAUCGCc -3'
miRNA:   3'- aGCUUCUa-GCgCGUCGACGa----CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 21153 0.71 0.804786
Target:  5'- gUCGccGG-CGCGCAGCUcgcggaggaggcGCUGggCGCg -3'
miRNA:   3'- -AGCuuCUaGCGCGUCGA------------CGACuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 78034 0.7 0.855742
Target:  5'- -aGAAGGcgcUCGaCGC-GCUGCggGAUCGCc -3'
miRNA:   3'- agCUUCU---AGC-GCGuCGACGa-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 112362 0.7 0.84773
Target:  5'- gCGgcGAUCGCGCu-CUGCcgGAcUCGCg -3'
miRNA:   3'- aGCuuCUAGCGCGucGACGa-CU-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 52653 0.7 0.855742
Target:  5'- gCGAAGcggaGCGCGuGgaGCUGGUUGCg -3'
miRNA:   3'- aGCUUCuag-CGCGU-CgaCGACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 113232 0.7 0.855742
Target:  5'- cUCGGAG--CGCGCGGCcGCgGAgCGCg -3'
miRNA:   3'- -AGCUUCuaGCGCGUCGaCGaCUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 88295 0.7 0.855742
Target:  5'- aCGAGGcgCucuGCgGCgAGCUGCUGGUgGCg -3'
miRNA:   3'- aGCUUCuaG---CG-CG-UCGACGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 115019 0.7 0.855742
Target:  5'- gUCGAGGAacacuUCGUGCucgcccacgGGCUGCacGUCGCu -3'
miRNA:   3'- -AGCUUCU-----AGCGCG---------UCGACGacUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 81558 0.7 0.839516
Target:  5'- gUCGAccAGAUCGaGCuGCUGCUGGa-GCa -3'
miRNA:   3'- -AGCU--UCUAGCgCGuCGACGACUagCG- -5'
21690 3' -53.3 NC_004812.1 + 61547 0.7 0.831106
Target:  5'- gCGgcGGUCGCGUAGCcGCUcg-CGCc -3'
miRNA:   3'- aGCuuCUAGCGCGUCGaCGAcuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 112310 0.7 0.863545
Target:  5'- cUCGA--GUCGCGCcucgGGCgGCUGGcCGCg -3'
miRNA:   3'- -AGCUucUAGCGCG----UCGaCGACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 56599 0.7 0.842826
Target:  5'- gCGAcGAUCGCGCGGCgcgagcucccugagGCUGGcgaGCu -3'
miRNA:   3'- aGCUuCUAGCGCGUCGa-------------CGACUag-CG- -5'
21690 3' -53.3 NC_004812.1 + 55510 0.7 0.858889
Target:  5'- gCGAAGGUCGCcgGCAGCaccucgccguggacGCUGAccCGCa -3'
miRNA:   3'- aGCUUCUAGCG--CGUCGa-------------CGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 69862 0.7 0.84773
Target:  5'- aCGAccGGGUCgGCcCGGC-GCUGGUCGCc -3'
miRNA:   3'- aGCU--UCUAG-CGcGUCGaCGACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.