Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21690 | 3' | -53.3 | NC_004812.1 | + | 65532 | 0.69 | 0.885632 |
Target: 5'- cCGAGGccaagCgGCGCaAGCUGCUGGUCu- -3' miRNA: 3'- aGCUUCua---G-CGCG-UCGACGACUAGcg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 56796 | 0.69 | 0.892537 |
Target: 5'- cCGgcGccguUCGCGCGGCgcaGCUGGcggCGCg -3' miRNA: 3'- aGCuuCu---AGCGCGUCGa--CGACUa--GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 96169 | 0.69 | 0.871131 |
Target: 5'- uUCGAGGG-CG-GCGGCgaGgUGGUCGCg -3' miRNA: 3'- -AGCUUCUaGCgCGUCGa-CgACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 154743 | 0.69 | 0.885632 |
Target: 5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3' miRNA: 3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 44257 | 0.69 | 0.905633 |
Target: 5'- gCGAGGGcCGa-UAGCcGCUGGUCGCg -3' miRNA: 3'- aGCUUCUaGCgcGUCGaCGACUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 29961 | 0.69 | 0.905633 |
Target: 5'- aCGggGcgCGCgaacaGCAGCUGCcGGagGCu -3' miRNA: 3'- aGCuuCuaGCG-----CGUCGACGaCUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 95004 | 0.69 | 0.905633 |
Target: 5'- gUGGAGcucgcUCGCGCAGgUGCUGGg-GCu -3' miRNA: 3'- aGCUUCu----AGCGCGUCgACGACUagCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 30934 | 0.69 | 0.899205 |
Target: 5'- cUGAAGAUCGCGCGGCccgagGCcuccccgagGGUCa- -3' miRNA: 3'- aGCUUCUAGCGCGUCGa----CGa--------CUAGcg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 103333 | 0.69 | 0.892537 |
Target: 5'- gUCGAGu-UCGCGCGGCUGCaGuucaCGUa -3' miRNA: 3'- -AGCUUcuAGCGCGUCGACGaCua--GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 140598 | 0.69 | 0.899205 |
Target: 5'- -gGAAGGccUgGCGgAGCUGCUGcuggCGCg -3' miRNA: 3'- agCUUCU--AgCGCgUCGACGACua--GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 69334 | 0.69 | 0.899205 |
Target: 5'- cUCGuGGG-CGCGCAGCUGCUccaccaGCu -3' miRNA: 3'- -AGCuUCUaGCGCGUCGACGAcuag--CG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 145447 | 0.69 | 0.899205 |
Target: 5'- gCGAuGAcCGCGCGGa-GCUGcUCGCg -3' miRNA: 3'- aGCUuCUaGCGCGUCgaCGACuAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 138316 | 0.69 | 0.905001 |
Target: 5'- -gGAGGGUgGCGcCGGCgcggaggaggcccUGCgGAUCGCg -3' miRNA: 3'- agCUUCUAgCGC-GUCG-------------ACGaCUAGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 29235 | 0.69 | 0.885632 |
Target: 5'- gCGggGGUCGCGgAGgaGCgggccgGGgcugCGCg -3' miRNA: 3'- aGCuuCUAGCGCgUCgaCGa-----CUa---GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 105878 | 0.69 | 0.878495 |
Target: 5'- gUCGuGGG-CGCGCGGUgcGCUGGcgcUCGCg -3' miRNA: 3'- -AGCuUCUaGCGCGUCGa-CGACU---AGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100289 | 0.69 | 0.871131 |
Target: 5'- cUCGGAGGcggCGCGCGcGCgcgcGCUGcgCGUg -3' miRNA: 3'- -AGCUUCUa--GCGCGU-CGa---CGACuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 82085 | 0.69 | 0.892537 |
Target: 5'- aUCGAGGG-CGCGUGGCccgGCUGGcCGg -3' miRNA: 3'- -AGCUUCUaGCGCGUCGa--CGACUaGCg -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 50133 | 0.69 | 0.891174 |
Target: 5'- gCGggGcucaucgcgugCGCGCAGCUGgaGcgCGUg -3' miRNA: 3'- aGCuuCua---------GCGCGUCGACgaCuaGCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 147705 | 0.69 | 0.899205 |
Target: 5'- cCGggGGUCGUGUggcgcggggGGCUGUacgUGAUgaCGCg -3' miRNA: 3'- aGCuuCUAGCGCG---------UCGACG---ACUA--GCG- -5' |
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21690 | 3' | -53.3 | NC_004812.1 | + | 100982 | 0.68 | 0.934096 |
Target: 5'- gUCGAagacgcgccccAGAaaggccgccUCGCGCGGCgcgagGCagcgGAUCGCc -3' miRNA: 3'- -AGCU-----------UCU---------AGCGCGUCGa----CGa---CUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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