miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21690 3' -53.3 NC_004812.1 + 154842 0.68 0.923452
Target:  5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3'
miRNA:   3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 109391 0.68 0.923452
Target:  5'- gCGGAGG-CGgaGCGGCUGUUGGUCc- -3'
miRNA:   3'- aGCUUCUaGCg-CGUCGACGACUAGcg -5'
21690 3' -53.3 NC_004812.1 + 152857 0.68 0.911818
Target:  5'- cCGgcGccgcCGCGCcGCUGCUGG-CGCg -3'
miRNA:   3'- aGCuuCua--GCGCGuCGACGACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 27349 0.68 0.911818
Target:  5'- cCGgcGccgcCGCGCcGCUGCUGG-CGCg -3'
miRNA:   3'- aGCuuCua--GCGCGuCGACGACUaGCG- -5'
21690 3' -53.3 NC_004812.1 + 49912 0.68 0.917759
Target:  5'- -------aCGCGCAGCgacgGCUgGAUCGCc -3'
miRNA:   3'- agcuucuaGCGCGUCGa---CGA-CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 20098 0.68 0.923452
Target:  5'- cUCGGAGGagcgcgccgCGCGCAGCgGCg---CGCg -3'
miRNA:   3'- -AGCUUCUa--------GCGCGUCGaCGacuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 29334 0.68 0.923452
Target:  5'- gUCGgcGcGggGCGCGGCUGCgaggGggCGCg -3'
miRNA:   3'- -AGCuuC-UagCGCGUCGACGa---CuaGCG- -5'
21690 3' -53.3 NC_004812.1 + 122718 0.68 0.923452
Target:  5'- gCGgcGAUCGCGacggccgaguccUGGCUGCUG-UUGCc -3'
miRNA:   3'- aGCuuCUAGCGC------------GUCGACGACuAGCG- -5'
21690 3' -53.3 NC_004812.1 + 72059 0.68 0.923452
Target:  5'- gUCGggGG-CGCuggggGCGGCgGCUGuuUCGCc -3'
miRNA:   3'- -AGCuuCUaGCG-----CGUCGaCGACu-AGCG- -5'
21690 3' -53.3 NC_004812.1 + 83725 0.68 0.936106
Target:  5'- aUCGAGaacgcgugccuGGcgGCGCAGCUGCccgcgcuguccgcgcUGAUCGCc -3'
miRNA:   3'- -AGCUU-----------CUagCGCGUCGACG---------------ACUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 113099 0.68 0.928898
Target:  5'- -gGGAGAUCGaGCcaaAGCgGCUGAcgCGCa -3'
miRNA:   3'- agCUUCUAGCgCG---UCGaCGACUa-GCG- -5'
21690 3' -53.3 NC_004812.1 + 93821 0.68 0.92566
Target:  5'- cCGggGAcUCGCGCAgggccgcggccauccGCUcGCagaGGUCGCg -3'
miRNA:   3'- aGCuuCU-AGCGCGU---------------CGA-CGa--CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 46247 0.68 0.934096
Target:  5'- gCGAAGAUCGUGUccucgaucucggGGCgcgGCagGAUcCGCg -3'
miRNA:   3'- aGCUUCUAGCGCG------------UCGa--CGa-CUA-GCG- -5'
21690 3' -53.3 NC_004812.1 + 100982 0.68 0.934096
Target:  5'- gUCGAagacgcgccccAGAaaggccgccUCGCGCGGCgcgagGCagcgGAUCGCc -3'
miRNA:   3'- -AGCU-----------UCU---------AGCGCGUCGa----CGa---CUAGCG- -5'
21690 3' -53.3 NC_004812.1 + 21898 0.68 0.928898
Target:  5'- cCGAAGAacgucccgguUCGCGCAGCcgGCgGcUCGg -3'
miRNA:   3'- aGCUUCU----------AGCGCGUCGa-CGaCuAGCg -5'
21690 3' -53.3 NC_004812.1 + 101410 0.68 0.928898
Target:  5'- -aGggGGUCGUccGCAGCUgGC-GGUCGg -3'
miRNA:   3'- agCuuCUAGCG--CGUCGA-CGaCUAGCg -5'
21690 3' -53.3 NC_004812.1 + 128729 0.67 0.95642
Target:  5'- cCGAGG--CGCGCGGCgGCcGAaggCGCg -3'
miRNA:   3'- aGCUUCuaGCGCGUCGaCGaCUa--GCG- -5'
21690 3' -53.3 NC_004812.1 + 14743 0.67 0.939048
Target:  5'- cCGAGGGcUCcCGCGGCUGCUccGGggGCg -3'
miRNA:   3'- aGCUUCU-AGcGCGUCGACGA--CUagCG- -5'
21690 3' -53.3 NC_004812.1 + 107664 0.67 0.939048
Target:  5'- gUCGAGGcucgcCGCGuCGGCgccaaGCUGGUgGCg -3'
miRNA:   3'- -AGCUUCua---GCGC-GUCGa----CGACUAgCG- -5'
21690 3' -53.3 NC_004812.1 + 78792 0.67 0.95642
Target:  5'- gUCGggGGUCgGC-CGGCUGg-GGUCGg -3'
miRNA:   3'- -AGCuuCUAG-CGcGUCGACgaCUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.